RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 FBXL12Q9NXK8 326 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 APEX2Q9UBZ4 518 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SLC12A6Q9UHW9 1150 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 PCOLCE2Q9UKZ9 415 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 PCDHGC3Q9UN70 934 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 NCKAP1Q9Y2A7 1128 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 ANKRD6Q9Y2G4 727 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 FNDC3AQ9Y2H6 1198 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 PCDHGB2Q9Y5G2 931 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SNX11Q9Y5W9 270 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SPEGQ15772 3267 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 NUMA1Q14980 2115 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 EPG5Q9HCE0 2579 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 ITIH6Q6UXX5 1313 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 A0A1W2PP55 124 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 FAM47DPA6NHR8 397 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 F5H5T6 163 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 FOXN3O00409 490 aaPredicted RBP7.87□□□□□ -1.15
CUX1-219ENST00000606749 KCNK3O14649 394 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 MID1O15344 667 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 RNASEH1O60930 286 aaKnown RBP7.87□□□□□ -1.15
CUX1-219ENST00000606749 FSBPO95073 299 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 IGHV4-34P06331 123 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 FTH1P19P0C7X4 201 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 SLC2A3P11169 496 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 MZF1P28698 734 aaPredicted RBP7.87□□□□□ -1.15
CUX1-219ENST00000606749 CCR1P32246 355 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 SLC8A1P32418 973 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 CLCN1P35523 988 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 GRIA4P48058 902 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 PLK1P53350 603 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 GALCP54803 685 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 CDK17Q00537 523 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 PTK2Q05397 1052 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 SLC12A1Q13621 1099 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 TEAD4Q15561 434 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 CST6Q15828 149 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 TTC31Q49AM3 519 aaPredicted RBP7.87□□□□□ -1.15
CUX1-219ENST00000606749 KIAA0895LQ68EN5 471 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 SMYD5Q6GMV2 418 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 C11orf57Q6ZUT1 292 aaPredicted RBP7.87□□□□□ -1.15
CUX1-219ENST00000606749 CHSY1Q86X52 802 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 MMAAQ8IVH4 418 aaKnown RBP7.87□□□□□ -1.15
CUX1-219ENST00000606749 STK40Q8N2I9 435 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 PNPLA1Q8N8W4 532 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 ADAMTS14Q8WXS8 1223 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 PTPRN2Q92932 1015 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 RPL10LQ96L21 214 aaKnown RBP7.87□□□□□ -1.15
CUX1-219ENST00000606749 SIX2Q9NPC8 291 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 ASNSD1Q9NWL6 643 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 SERGEFQ9UGK8 458 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 DNAJC12Q9UKB3 198 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 CACNA1EQ15878 2313 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 CHD8Q9HCK8 2581 aa7.87□□□□□ -1.15
CUX1-219ENST00000606749 MUC22E2RYF6 1773 aaPredicted RBP7.87□□□□□ -1.15
CUX1-219ENST00000606749 SYNJ2BP-COX16A0A087WUM0 186 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 EDDM13A0A1B0GTR0 161 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 A0A1W2PPC4 97 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 C10orf142B7Z368 130 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 HSF2BPO75031 334 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 GRAP2O75791 330 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 ERBB2P04626 1255 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 CAPNS1P04632 268 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 VAV1P15498 845 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 PDGFRAP16234 1089 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 GOT1P17174 413 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 ABCB4P21439 1286 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 KRT9P35527 623 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 NNMTP40261 264 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 MTIF2P46199 727 aaKnown RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 SNX16P57768 344 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 RACK1P63244 317 aaKnown RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 SLC6A3Q01959 620 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 SULT2A1Q06520 285 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 SFSWAPQ12872 951 aaKnown RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 AUHQ13825 339 aaKnown RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 KCNJ12Q14500 433 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 SUZ12Q15022 739 aaKnown RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 RNF219Q5W0B1 726 aaPredicted RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 OR6B2Q6IFH4 312 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 DPY19L2P1Q6NXN4 242 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 FBXL22Q6P050 247 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 NCEH1Q6PIU2 408 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 OLFML1Q6UWY5 402 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 LAYNQ6UX15 382 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 FAM183BPQ6ZVS7 135 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 SLC47A2Q86VL8 602 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 CIR1Q86X95 450 aaPredicted RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 PASD1Q8IV76 773 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 FAM71AQ8IYT1 594 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 CCAR2Q8N163 923 aaKnown RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 BAHD1Q8TBE0 780 aaPredicted RBP7.86□□□□□ -1.15
CUX1-219ENST00000606749 RHBDD1Q8TEB9 315 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 RNF34Q969K3 372 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 IGSF8Q969P0 613 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 ALG14Q96F25 216 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 CDC6Q99741 560 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 OMDQ99983 421 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 FAM204AQ9H8W3 233 aa7.86□□□□□ -1.15
CUX1-219ENST00000606749 EBF2Q9HAK2 575 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms