RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TCF7L2Q9NQB0 619 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 ADA2Q9NZK5 511 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 FBXO21O94952 628 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 PIK3R1P27986 724 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 PRAMEP78395 509 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 LY6KQ17RY6 165 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 CCDC14Q49A88 953 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 LBX2Q6XYB7 198 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 NPAS2Q99743 824 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 CCT7Q99832 543 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 APOL2Q9BQE5 337 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 DCUN1D5Q9BTE7 237 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 FAF1Q9UNN5 650 aaPredicted RBP18.78■□□□□ 0.6
UPF1-210ENST00000600689 OGTO15294 1046 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 SUPT3HO75486 399 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 FAM58BPP0C7Q3 252 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 DESP17661 470 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 STT3AP46977 705 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 CYLC2Q14093 348 aaPredicted RBP18.78■□□□□ 0.6
UPF1-210ENST00000600689 ACBD5Q5T8D3 534 aaPredicted RBP18.78■□□□□ 0.6
UPF1-210ENST00000600689 IL31Q6EBC2 164 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 DUS1LQ6P1R4 473 aaKnown RBP18.78■□□□□ 0.6
UPF1-210ENST00000600689 LRRC8BQ6P9F7 803 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 GPC2Q8N158 579 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 PCDH20Q8N6Y1 951 aaKnown RBP18.78■□□□□ 0.6
UPF1-210ENST00000600689 FNIP1Q8TF40 1166 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 EME1Q96AY2 570 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 RPS6KL1Q9Y6S9 549 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 WDR90Q96KV7 1748 aa18.78■□□□□ 0.6
UPF1-210ENST00000600689 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.77■□□□□ 0.6
UPF1-210ENST00000600689 SOWAHBA6NEL2 793 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 C2CD4BA6NLJ0 364 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 P4HA1P13674 534 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 GPD2P43304 727 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 SH2D4BQ5SQS7 431 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 NOL9Q5SY16 702 aaKnown RBP18.77■□□□□ 0.6
UPF1-210ENST00000600689 SPATA6LQ8N4H0 392 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 C7orf31Q8N865 590 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 TMEM176AQ96HP8 235 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 AGAP2Q99490 1192 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 C20orf96Q9NUD7 363 aaPredicted RBP18.77■□□□□ 0.6
UPF1-210ENST00000600689 SYBUQ9NX95 663 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 ARHGEF38Q9NXL2 777 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 TSPAN16Q9UKR8 245 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 SORCS3Q9UPU3 1222 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 ZNF195O14628 629 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 PENKP01210 267 aaPredicted RBP18.77■□□□□ 0.6
UPF1-210ENST00000600689 PRKCGP05129 697 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 PGK2P07205 417 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 TFPTP0C1Z6 253 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 FSCBQ5H9T9 825 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 BNC2Q6ZN30 1099 aaPredicted RBP18.77■□□□□ 0.6
UPF1-210ENST00000600689 CLEC4CQ8WTT0 213 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 SENP6Q9GZR1 1112 aaPredicted RBP18.77■□□□□ 0.6
UPF1-210ENST00000600689 TMPRSS4Q9NRS4 437 aa18.77■□□□□ 0.6
UPF1-210ENST00000600689 TNFAIP8O95379 198 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 SDC4P31431 198 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 AVPR1AP37288 418 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 ART3Q13508 389 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 CEACAM7Q14002 265 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 LAYNQ6UX15 382 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 MYO1HQ8N1T3 1032 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 DCLK2Q8N568 766 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 ATP6V1E2Q96A05 226 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 OTUD5Q96G74 571 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 FAM210AQ96ND0 272 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 BTBD9Q96Q07 612 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 PCDHAC1Q9H158 963 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 ELP3Q9H9T3 547 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 SNX15Q9NRS6 342 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 SIX4Q9UIU6 781 aa18.77■□□□□ 0.59
UPF1-210ENST00000600689 ATP9BO43861 1147 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 MSCO60682 206 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 TRMUO75648 421 aaKnown RBP18.76■□□□□ 0.59
UPF1-210ENST00000600689 FARP2O94887 1054 aaPredicted RBP18.76■□□□□ 0.59
UPF1-210ENST00000600689 CYP3A5P20815 502 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 TMEM259Q4ZIN3 620 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 SH3D19Q5HYK7 790 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 CYP2R1Q6VVX0 501 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 MARVELD2Q8N4S9 558 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 ACVR1CQ8NER5 493 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 MCRS1Q96EZ8 462 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 SLC4A5Q9BY07 1137 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 PAPSS1O43252 624 aaPredicted RBP18.76■□□□□ 0.59
UPF1-210ENST00000600689 JUNP05412 331 aaKnown RBP18.76■□□□□ 0.59
UPF1-210ENST00000600689 NDST1P52848 882 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 ADGRE1Q14246 886 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 TP53INP2Q8IXH6 220 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 CPNE9Q8IYJ1 553 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 C1orf127Q8N9H9 656 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 KYQ8NBH2 561 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 COLGALT1Q8NBJ5 622 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 DNERQ8NFT8 737 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 KLHL32Q96NJ5 620 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 ACO2Q99798 780 aaKnown RBP18.76■□□□□ 0.59
UPF1-210ENST00000600689 DNAJC28Q9NX36 388 aa18.76■□□□□ 0.59
UPF1-210ENST00000600689 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.75■□□□□ 0.59
UPF1-210ENST00000600689 ZSCAN9O15535 394 aaPredicted RBP18.75■□□□□ 0.59
UPF1-210ENST00000600689 SEC24DO94855 1032 aaPredicted RBP18.75■□□□□ 0.59
UPF1-210ENST00000600689 MX2P20592 715 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms