RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	STK19	P49842	368 aa	Predicted RBP	18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	C21orf59	P57076	290 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ECT2L	Q008S8	904 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SCAP	Q12770	1279 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CST6	Q15828	149 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	KCNT1	Q5JUK3	1230 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	NCEH1	Q6PIU2	408 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MARCH9	Q86YJ5	346 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	STK40	Q8N2I9	435 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ATP6V0D2	Q8N8Y2	350 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MYO19	Q96H55	970 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MED15	Q96RN5	788 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TRIM62	Q9BVG3	475 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	IRX2	Q9BZI1	471 aa	Predicted RBP	18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	NEUROG2	Q9H2A3	272 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SLC12A6	Q9UHW9	1150 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CNTN6	Q9UQ52	1028 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CACNA1G	O43497	2377 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	EDDM13	A0A1B0GTR0	161 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552		H0Y8X5	98 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ZNF883	P0CG24	379 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SLC8A1	P32418	973 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	GALC	P54803	685 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CDK17	Q00537	523 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PDCL	Q13371	301 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	C9orf64	Q5T6V5	341 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	OR6B2	Q6IFH4	312 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	LRSAM1	Q6UWE0	723 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	GBP6	Q6ZN66	633 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	DEFB106A	Q8N104	65 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	BTN2A3P	Q96KV6	586 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SLC6A18	Q96N87	628 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	THAP9	Q9H5L6	903 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	AASDHPPT	Q9NRN7	309 aa		18.17	■□□□□ 0.5
SHKBP1-223	ENST00000600552	LRRC72	A6NJI9	287 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PLK4	O00444	970 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	FLRT2	O43155	660 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	IL1B	P01584	269 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	IGHV4-34	P06331	123 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SRPRA	P08240	638 aa	Known RBP	18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ABCB4	P21439	1286 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	NNMT	P40261	264 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MTIF2	P46199	727 aa	Known RBP	18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	GRIA4	P48058	902 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	RPL34	P49207	117 aa	Known RBP	18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MARS	P56192	900 aa	Known RBP	18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SFSWAP	Q12872	951 aa	Known RBP	18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	NME3	Q13232	169 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	NNT	Q13423	1086 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TPD52L1	Q16890	204 aa	Predicted RBP	18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ACCSL	Q4AC99	568 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TRIM65	Q6PJ69	517 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	USP30	Q70CQ3	517 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TMEM110	Q86TL2	294 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	OR14C36	Q8NHC7	312 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	STK32A	Q8WU08	396 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CDC6	Q99741	560 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ACE2	Q9BYF1	805 aa	Predicted RBP	18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	DDIT4	Q9NX09	232 aa		18.16	■□□□□ 0.5
SHKBP1-223	ENST00000600552	GOLGA4	Q13439	2230 aa	Known RBP	18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TARSL2	A2RTX5	802 aa	Known RBP	18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	BECN2	A8MW95	431 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	KCNU1	A8MYU2	1149 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TAF4	O00268	1085 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	BNIP3L	O60238	219 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	VAV1	P15498	845 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MZF1	P28698	734 aa	Predicted RBP	18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	GGCX	P38435	758 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CCT8	P50990	548 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	POM121L1P	Q3SYA9	428 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	FOXR2	Q6PJQ5	311 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	C19orf48	Q6RUI8	117 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ENOSF1	Q7L5Y1	443 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	GATAD2A	Q86YP4	633 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CCAR2	Q8N163	923 aa	Known RBP	18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	IGSF8	Q969P0	613 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PPP1R13B	Q96KQ4	1090 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	FAM129B	Q96TA1	746 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SYNC	Q9H7C4	482 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	RWDD2A	Q9UIY3	292 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SCML1	Q9UN30	329 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PCDHGB2	Q9Y5G2	931 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PLXNA2	O75051	1894 aa		18.15	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PLXNB3	Q9ULL4	1909 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	FAM221B	A6H8Z2	402 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	CENPC	Q03188	943 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	EXOC3L4	Q17RC7	722 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	RABGAP1L	Q5R372	815 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	CCNI2	Q6ZMN8	369 aa	Predicted RBP	18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	GLRX5	Q86SX6	157 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	WDTC1	Q8N5D0	677 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	AADAT	Q8N5Z0	425 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	RPRD1A	Q96P16	312 aa	Predicted RBP	18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	CPXM1	Q96SM3	734 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	SIK2	Q9H0K1	926 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	CCDC86	Q9H6F5	360 aa	Known RBP	18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	PLCB1	Q9NQ66	1216 aa		18.14	■□□□□ 0.49
SHKBP1-223	ENST00000600552	LHX6	Q9UPM6	363 aa		18.14	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms