RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 PRDM16Q9HAZ2 1276 aa17.05■□□□□ 0.32
SHKBP1-219ENST00000599575 FBRSL1Q9HCM7 1045 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-219ENST00000599575 TMEM248Q9NWD8 314 aa17.05■□□□□ 0.32
SHKBP1-219ENST00000599575 GGA2Q9UJY4 613 aa17.05■□□□□ 0.32
SHKBP1-219ENST00000599575 NDRG2Q9UN36 371 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-219ENST00000599575 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHKBP1-219ENST00000599575 TECTAO75443 2155 aa17.05■□□□□ 0.32
SHKBP1-219ENST00000599575 ILVBLA1L0T0 632 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 WASH4PA8MWX3 477 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 ZNF487B1APH4 448 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 CHURC1-FNTBB4DL54 471 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 BUB1BO60566 1050 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 ASLP04424 464 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 ATP5BP06576 529 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 RARAP10276 462 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 PABPC1P11940 636 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 IL1R2P27930 398 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 EPHB2P29323 1055 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 HLA-FP30511 346 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 ARL4AP40617 200 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 SSR1P43307 286 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 NAP1L1P55209 391 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 SULT2A1Q06520 285 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 FZD5Q13467 585 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 KDM1BQ8NB78 822 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 KIAA1524Q8TCG1 905 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 MYEOVQ96EZ4 313 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 CHRDQ9H2X0 955 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 TMPRSS4Q9NRS4 437 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 DDX56Q9NY93 547 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 ALG6Q9Y672 507 aa17.04■□□□□ 0.32
SHKBP1-219ENST00000599575 FAM72CH0Y354 149 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 H3BRJ5 948 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 K7EQS6 105 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 PSTPIP1O43586 416 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 SPOPO43791 374 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 HNRNPLP14866 589 aaKnown RBP eCLIP17.03■□□□□ 0.321e-11■■■■□ 20.2
SHKBP1-219ENST00000599575 OR1E1P30953 314 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 TPI1P60174 286 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 ARTNQ5T4W7 220 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 FAM72AQ5TYM5 149 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 FAM72DQ6L9T8 149 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 RWDD4Q6NW29 188 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 DAAM2Q86T65 1068 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 NLRP14Q86W24 1093 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 FAM72BQ86X60 149 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 LZTR1Q8N653 840 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 RTL3Q8N8U3 475 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 TTC17Q96AE7 1141 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 ACDQ96AP0 544 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 LMLNQ96KR4 655 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 C11orf16Q9NQ32 467 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 ABCB8Q9NUT2 735 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 ELOVL2Q9NXB9 296 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 DLGAP2Q9P1A6 1054 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 ZNF212Q9UDV6 495 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 COL4A3Q01955 1670 aa17.03■□□□□ 0.32
SHKBP1-219ENST00000599575 EEF2KO00418 725 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 DAPK3O43293 454 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 ZSCAN12O43309 604 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 CREB3O43889 395 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 PDGFBP01127 241 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 EGFP01133 1207 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 POLR2EP19388 210 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 COMTP21964 271 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 GGCXP38435 758 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 VASPP50552 380 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 YBEYP58557 167 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 KDSRQ06136 332 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 LMAN2Q12907 356 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 ALFQ53S48 1182 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 PPP6R3Q5H9R7 873 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 KCNT1Q5JUK3 1230 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 CXorf57Q6NSI4 855 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 RFX8Q6ZV50 586 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 PYROXD2Q8N2H3 581 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 SPEM1Q8N4L4 309 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 ZNF670Q9BS34 389 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 C2orf49Q9BVC5 232 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 MAGEH1Q9H213 219 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 MPP6Q9NZW5 540 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 SALL4Q9UJQ4 1053 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 CLEC4EQ9ULY5 219 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 PLA2G4CQ9UP65 541 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 NEU3Q9UQ49 428 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 MTF2Q9Y483 593 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 DUSP10Q9Y6W6 482 aa17.02■□□□□ 0.32
SHKBP1-219ENST00000599575 TMEM110-MUSTN1A8MSY1 372 aa17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 CNTN5O94779 1100 aa17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 RHOCP08134 193 aa17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 DLDP09622 509 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 KIR2DL1P43626 348 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 KRT81Q14533 505 aa17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 GEN1Q17RS7 908 aa17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 SMTNL2Q2TAL5 461 aa17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 PLEKHG6Q3KR16 790 aa17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 ODF2Q5BJF6 829 aa17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 NAIF1Q69YI7 327 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-219ENST00000599575 SDE2Q6IQ49 451 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms