RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MRGPRX3Q96LB0 322 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 IPO9Q96P70 1041 aaKnown RBP10.51□□□□□ -0.73
TRIM28-210ENST00000597618 BLZF1Q9H2G9 400 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 LRRC4Q9HBW1 653 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 DMTF1Q9Y222 760 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 ITIH6Q6UXX5 1313 aa10.51□□□□□ -0.73
TRIM28-210ENST00000597618 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 TTC34A8MYJ7 566 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 PDXKO00764 312 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 XPO1O14980 1071 aaKnown RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 SPTLC2O15270 562 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 SLC7A4O43246 635 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 OPA1O60313 960 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 PPP6R2O75170 966 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 CSO75390 466 aaKnown RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 MOCS3O95396 460 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 GP1BAP07359 652 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 CKMT1AP12532 417 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 MZF1P28698 734 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 CASP1P29466 404 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 GCLMP48507 274 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 VAMP7P51809 220 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 ADIGQ0VDE8 80 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 CDH18Q13634 790 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 ELAVL3Q14576 367 aaKnown RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 STAT4Q14765 748 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 C8orf34Q49A92 452 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 FAM133BQ5BKY9 247 aaKnown RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 PITRM1Q5JRX3 1037 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 RNF219Q5W0B1 726 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 BSPRYQ5W0U4 402 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 CEP135Q66GS9 1140 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 IGF2-ASQ6U949 168 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 UNC45BQ8IWX7 931 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 SIX6OS1Q8N1H7 587 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 SLC4A11Q8NBS3 891 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 LINC00301Q8NCQ3 95 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 CCDC97Q96F63 343 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 FAXDC2Q96IV6 333 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 VCPIP1Q96JH7 1222 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 FAM129BQ96TA1 746 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 DDX50Q9BQ39 737 aaKnown RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 KDM4CQ9H3R0 1056 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 ASCL3Q9NQ33 180 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 ABCC13Q9NSE7 274 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 EVA1BQ9NVM1 165 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 STIM2Q9P246 746 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 CYTH4Q9UIA0 394 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 INTS6Q9UL03 887 aaKnown RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 ERVW-1Q9UQF0 538 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 SSUH2Q9Y2M2 353 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 CEP83Q9Y592 693 aa10.5□□□□□ -0.73
TRIM28-210ENST00000597618 HEMK1Q9Y5R4 338 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 TLN1Q9Y490 2541 aaKnown RBP10.5□□□□□ -0.73
TRIM28-210ENST00000597618 LRRK2Q5S007 2527 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 GOLGA6L7A0A1B0GV03 622 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 A0A1B0GVM2 712 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 YJEFN3A6XGL0 299 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 E7ENQ6 273 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 PRAMEF26H0Y7S4 382 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 K7ENP7 123 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 MAPK13O15264 365 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 POLR2DO15514 142 aaKnown RBP10.49□□□□□ -0.73
TRIM28-210ENST00000597618 ACSL4O60488 711 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 IL1BP01584 269 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 IGLV3-27P01718 113 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 ALPPL2P10696 532 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 SYT1P21579 422 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 DGKAP23743 735 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 RBMS1P29558 406 aaKnown RBP10.49□□□□□ -0.73
TRIM28-210ENST00000597618 SLC6A4P31645 630 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 ECT2LQ008S8 904 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 CUL4BQ13620 913 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 GOLGA7BQ2TAP0 167 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 SETMARQ53H47 684 aaPredicted RBP10.49□□□□□ -0.73
TRIM28-210ENST00000597618 MSANTD2Q6P1R3 559 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 INO80CQ6PI98 192 aaPredicted RBP10.49□□□□□ -0.73
TRIM28-210ENST00000597618 INTS8Q75QN2 995 aaKnown RBP10.49□□□□□ -0.73
TRIM28-210ENST00000597618 TRIM69Q86WT6 500 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 STK40Q8N2I9 435 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 SLC25A45Q8N413 288 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 CARNMT1Q8N4J0 409 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 KIAA0895Q8NCT3 520 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 NDRG1Q92597 394 aaKnown RBP10.49□□□□□ -0.73
TRIM28-210ENST00000597618 AZIN2Q96A70 460 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 FAM131CQ96AQ9 280 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 PRICKLE1Q96MT3 831 aaPredicted RBP10.49□□□□□ -0.73
TRIM28-210ENST00000597618 ABCG4Q9H172 646 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 KCTD10Q9H3F6 313 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 ZSCAN16Q9H4T2 348 aaPredicted RBP10.49□□□□□ -0.73
TRIM28-210ENST00000597618 USP29Q9HBJ7 922 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 CISHQ9NSE2 258 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 EXOC1Q9NV70 894 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 ARHGAP20Q9P2F6 1191 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 HESX1Q9UBX0 185 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 FLNCQ14315 2725 aa10.49□□□□□ -0.73
TRIM28-210ENST00000597618 TULP2O00295 520 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 FFAR2O15552 330 aa10.48□□□□□ -0.73
TRIM28-210ENST00000597618 PLRG1O43660 514 aaKnown RBP10.48□□□□□ -0.73
TRIM28-210ENST00000597618 LZTS3O60299 673 aaPredicted RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms