RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 OTUD1Q5VV17 481 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 Q6ZS52 159 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 POLNQ7Z5Q5 900 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 TMEM150AQ86TG1 271 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 FAM131BQ86XD5 332 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 SHKBP1Q8TBC3 707 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 ZNF592Q92610 1267 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 CENPIQ92674 756 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 ZWILCHQ9H900 591 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 RBM12Q9NTZ6 932 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 PIGVQ9NUD9 493 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 GDE1Q9NZC3 331 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 PCSK1NQ9UHG2 260 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 SFMBT1Q9UHJ3 866 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 PACSIN2Q9UNF0 486 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 TLR6Q9Y2C9 796 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 MRPS23Q9Y3D9 190 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 PIAS3Q9Y6X2 628 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 APC2O95996 2303 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 USP9XQ93008 2570 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 CDX4O14627 284 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 ENC1O14682 589 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 RPP40O75818 363 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 ENDOD1O94919 500 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 TBX18O95935 607 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 KRT1P04264 644 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 PRB1P04280 392 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 CKMP06732 381 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 GJA1P17302 382 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 HDCP19113 662 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 CCR1P32246 355 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 AIF1P55008 147 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 TBX4P57082 545 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 TAS2R40P59535 323 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 COG7P83436 770 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 SLC25A11Q02978 314 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 MTA1Q13330 715 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 TEAD2Q15562 447 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 TRIP4Q15650 581 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 EFHC2Q5JST6 749 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 PRSS36Q5K4E3 855 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 BRMS1LQ5PSV4 323 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 TXNDC8Q6A555 127 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 BNIPLQ7Z465 357 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 CPNE8Q86YQ8 564 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 ARL14EPQ8N8R7 260 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 MAB21L3Q8N8X9 362 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 ING5Q8WYH8 240 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 HSPH1Q92598 858 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 TCEAL4Q96EI5 215 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 HES6Q96HZ4 224 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 WDCPQ9H6R7 721 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 BRD9Q9H8M2 597 aa12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 DDX56Q9NY93 547 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 HBS1LQ9Y450 684 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-213ENST00000597325 CCDC163A0A0D9SF12 145 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 ATP1A1P05023 1023 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 HMBSP08397 361 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 PLA2G2AP14555 144 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 CEBPBP17676 345 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 AVPR1AP37288 418 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 CETN2P41208 172 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 CCR2P41597 374 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 CXCR3P49682 368 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 RWDD2BP57060 319 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 GRM2Q14416 872 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 SLC5A9Q2M3M2 681 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 SMTNL2Q2TAL5 461 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 RAB6CQ53S08 254 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 BOLA3Q53S33 107 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 NUGGCQ68CJ6 796 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 DDX42Q86XP3 938 aaKnown RBP eCLIP12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 ARFGAP1Q8N6T3 406 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 DEFB124Q8NES8 71 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 KIF18AQ8NI77 898 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 TEKT4Q8WW24 435 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 IRF7Q92985 503 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 CD101Q93033 1021 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 NTAN1Q96AB6 310 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 PLD4Q96BZ4 506 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 PEBP4Q96S96 227 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 SNRNP25Q9BV90 132 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 RAB6CQ9H0N0 254 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 TASP1Q9H6P5 420 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 CALCOCO1Q9P1Z2 691 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 SLC12A6Q9UHW9 1150 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 AP4E1Q9UPM8 1137 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 PCDHA3Q9Y5H8 950 aa12.46□□□□□ -0.41
SHKBP1-213ENST00000597325 SPTA1P02549 2419 aa12.46□□□□□ -0.42
SHKBP1-213ENST00000597325 ARNTLO00327 626 aa12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 KCNK3O14649 394 aa12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 OLFM2O95897 454 aa12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 MOCS2O96007 188 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 IRF1P10914 325 aa12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 TCF4P15884 667 aa12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 TCP1P17987 556 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 HARS2P49590 506 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 MLLT6P55198 1093 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-213ENST00000597325 SLC7A9P82251 487 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms