RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 MSANTD3Q96H12 275 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 RPRD1AQ96P16 312 aaPredicted RBP10.89□□□□□ -0.67
LIG1-210ENST00000596332 PSMB7Q99436 277 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 DDX50Q9BQ39 737 aaKnown RBP10.89□□□□□ -0.67
LIG1-210ENST00000596332 HERPUD2Q9BSE4 406 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 OSBPL6Q9BZF3 934 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 ZWILCHQ9H900 591 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 ABCB8Q9NUT2 735 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 DNAJC17Q9NVM6 304 aaKnown RBP10.89□□□□□ -0.67
LIG1-210ENST00000596332 POLR3BQ9NW08 1133 aaPredicted RBP10.89□□□□□ -0.67
LIG1-210ENST00000596332 TMEM248Q9NWD8 314 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.89□□□□□ -0.67
LIG1-210ENST00000596332 FBXL21Q9UKT6 434 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 STARD13Q9Y3M8 1113 aa10.89□□□□□ -0.67
LIG1-210ENST00000596332 A0A0D9SEW6 157 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 A0A1B0GVM2 712 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 MACROD2A1Z1Q3 448 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 FAM86C2PA6NEL3 165 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 TCAF2A6NFQ2 919 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 FAM170BA6NMN3 283 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 DCLK1O15075 740 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 DDX3YO15523 660 aaKnown RBP10.88□□□□□ -0.67
LIG1-210ENST00000596332 PRPSAP2O60256 369 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 CLDN11O75508 207 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ZMPSTE24O75844 475 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 HNRNPLP14866 589 aaKnown RBP eCLIP10.88□□□□□ -0.67
LIG1-210ENST00000596332 RHOQP17081 205 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 AOC1P19801 751 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 KDELR1P24390 212 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 DEKP35659 375 aaKnown RBP10.88□□□□□ -0.67
LIG1-210ENST00000596332 GRIA2P42262 883 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 SLC1A1P43005 524 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 NOP2P46087 812 aaKnown RBP10.88□□□□□ -0.67
LIG1-210ENST00000596332 DGKGP49619 791 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 KDSRQ06136 332 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ADCY2Q08462 1091 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 KIF5AQ12840 1032 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ENPP2Q13822 863 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 DPYSL3Q14195 570 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 PTPRNQ16849 979 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ACBD5Q5T8D3 534 aaPredicted RBP10.88□□□□□ -0.67
LIG1-210ENST00000596332 Q6ZS52 159 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 RNF10Q8N5U6 811 aaKnown RBP10.88□□□□□ -0.67
LIG1-210ENST00000596332 PQLC3Q8N755 202 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 TMEM105Q8N8V8 129 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 PCDH19Q8TAB3 1148 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ALG3Q92685 438 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 MRGPRX3Q96LB0 322 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 CSPG4P5Q96PW8 444 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ACOX2Q99424 681 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 NCAPGQ9BPX3 1015 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 FEM1AQ9BSK4 669 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ZYG11BQ9C0D3 744 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 DHX35Q9H5Z1 703 aaKnown RBP10.88□□□□□ -0.67
LIG1-210ENST00000596332 LMAN1LQ9HAT1 526 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ZDHHC4Q9NPG8 344 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 ARHGEF4Q9NR80 690 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 DEC1Q9P2X7 70 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 LCMT1Q9UIC8 334 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 NDRG2Q9UN36 371 aaKnown RBP10.88□□□□□ -0.67
LIG1-210ENST00000596332 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.88□□□□□ -0.67
LIG1-210ENST00000596332 DOCK4Q8N1I0 1966 aa10.88□□□□□ -0.67
LIG1-210ENST00000596332 CREB3O43889 395 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 ADAM23O75077 832 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 PALMO75781 387 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 CYBBP04839 570 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 DCNP07585 359 aaKnown RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 CCDC175P0C221 793 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 PABPC1P11940 636 aaKnown RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 ERCC2P18074 760 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 DRD1P21728 446 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 AMPD1P23109 780 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 CSKP41240 450 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 CTSOP43234 321 aaPredicted RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 TNFRSF4P43489 277 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 RPS9P46781 194 aaKnown RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 CLCN5P51795 746 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 PLEKHG6Q3KR16 790 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 EFHC2Q5JST6 749 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 RABGAP1LQ5R372 815 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 TTC39BQ5VTQ0 682 aaPredicted RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 GRAMD4Q6IC98 578 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 MAMSTRQ6ZN01 415 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 RFX8Q6ZV50 586 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 TFAP2DQ7Z6R9 452 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 KIAA1328Q86T90 577 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 MFN1Q8IWA4 741 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 ARHGAP12Q8IWW6 846 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 MAML2Q8IZL2 1156 aaPredicted RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 UMODL1-AS1Q8N2C9 162 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 CARNMT1Q8N4J0 409 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 NPWQ8N729 165 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 RTL3Q8N8U3 475 aaKnown RBP10.87□□□□□ -0.67
LIG1-210ENST00000596332 NETO2Q8NC67 525 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 USP33Q8TEY7 942 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 SORCS1Q8WY21 1168 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 HSPH1Q92598 858 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 TBC1D31Q96DN5 1066 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 SHDQ96IW2 340 aa10.87□□□□□ -0.67
LIG1-210ENST00000596332 XPO6Q96QU8 1125 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms