RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 SLC45A4Q5BKX6 768 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 C3orf38Q5JPI3 329 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 C9orf64Q5T6V5 341 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 TBC1D3GQ6DHY5 549 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 TBC1D3CQ6IPX1 549 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 CCDC81Q6ZN84 652 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 KRBA2Q6ZNG9 492 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 UNC93AQ86WB7 457 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 TBC1D3Q8IZP1 549 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 OXR1Q8N573 874 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 MFSD2AQ8NA29 543 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 DEPDC7Q96QD5 511 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 CDK5RAP1Q96SZ6 601 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 PNPLA8Q9NP80 782 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 THSD1Q9NS62 852 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 WDR70Q9NW82 654 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 SATB2Q9UPW6 733 aa14.29□□□□□ -0.12
SHKBP1-208ENST00000595726 TEP1Q99973 2627 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 GOLGA6L7A0A1B0GV03 622 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 TTC34A8MYJ7 566 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 EFSO43281 561 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 RNASEH1O60930 286 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 NTRK1P04629 796 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 RPN1P04843 607 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 DGKAP23743 735 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 ASPAP45381 313 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 PSMD8P48556 350 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 ADPRHP54922 357 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 YWHAGP61981 247 aaKnown RBP eCLIP14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 SNRPFP62306 86 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 DLG4P78352 724 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 DPYDQ12882 1025 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 KNOP1Q1ED39 458 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 HNRNPA1L2Q32P51 320 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 LINC00303Q3SY05 128 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 RFWD3Q6PCD5 774 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 C12orf56Q8IXR9 622 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 PARD3BQ8TEW8 1205 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 MRGPRX3Q96LB0 322 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 FAM129BQ96TA1 746 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 DUSP16Q9BY84 665 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 ARHGAP20Q9P2F6 1191 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 ANKMY1Q9P2S6 941 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 SFMBT1Q9UHJ3 866 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 FZD4Q9ULV1 537 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 NBPF19A0A087WUL8 3843 aa14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 USP9YO00507 2555 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-208ENST00000595726 LATO43561 262 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 EXOC3O60645 756 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 TBL1XO60907 577 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 ZNF202O95125 648 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 GIMD1P0DJR0 217 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 P4HA1P13674 534 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 GOT1P17174 413 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 CTSOP43234 321 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 HARS2P49590 506 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 METAP1P53582 386 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 ST8SIA6P61647 398 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 SFSWAPQ12872 951 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 SGSM1Q2NKQ1 1148 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 ZSCAN23Q3MJ62 389 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 POM121L1PQ3SYA9 428 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 PPP1R26Q5T8A7 1209 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 NAPEPLDQ6IQ20 393 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 FOXR1Q6PIV2 292 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 ATG14Q6ZNE5 492 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 OR4C6Q8NH72 309 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 PLD4Q96BZ4 506 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 SLC46A1Q96NT5 459 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 ABCG4Q9H172 646 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 STIM2Q9P246 746 aa14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 CGNQ9P2M7 1197 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 INTS6Q9UL03 887 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-208ENST00000595726 SUV39H1O43463 412 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 RHOBTB3O94955 611 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 CKMT1AP12532 417 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 CD58P19256 250 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 RBMS1P29558 406 aaKnown RBP14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 CSKP41240 450 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 NUMBP49757 651 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 CLDN10P78369 228 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 SKOR1P84550 965 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 CLN3Q13286 438 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 ISXQ2M1V0 245 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 ARL13BQ3SXY8 428 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 ADGRF1Q5T601 910 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 ZNF574Q6ZN55 896 aaPredicted RBP14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 MMS22LQ6ZRQ5 1243 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 SND1Q7KZF4 910 aaKnown RBP eCLIP14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 STK40Q8N2I9 435 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 EDEM1Q92611 657 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 TTC17Q96AE7 1141 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 ATXN7L3BQ96GX2 97 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 PRR11Q96HE9 360 aaPredicted RBP14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 LMLNQ96KR4 655 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 NT5C1AQ9BXI3 368 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 KCTD10Q9H3F6 313 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 SLCO3A1Q9UIG8 710 aa14.26□□□□□ -0.13
SHKBP1-208ENST00000595726 LY6G6EA0A0G2JKS1 128 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms