RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TTC17Q96AE7 1141 aa15.49■□□□□ 0.07
UPF1-202ENST00000594243 CCDC42Q96M95 316 aa15.49■□□□□ 0.07
UPF1-202ENST00000594243 NCAPGQ9BPX3 1015 aa15.49■□□□□ 0.07
UPF1-202ENST00000594243 RAB6CQ9H0N0 254 aa15.49■□□□□ 0.07
UPF1-202ENST00000594243 RETREG1Q9H6L5 497 aa15.49■□□□□ 0.07
UPF1-202ENST00000594243 TMPRSS4Q9NRS4 437 aa15.49■□□□□ 0.07
UPF1-202ENST00000594243 CACNA2D2Q9NY47 1150 aa15.49■□□□□ 0.07
UPF1-202ENST00000594243 PPARGC1AQ9UBK2 798 aaKnown RBP15.49■□□□□ 0.07
UPF1-202ENST00000594243 OR12D3Q9UGF7 316 aa15.49■□□□□ 0.07
UPF1-202ENST00000594243 IGLV3-10A0A075B6K4 115 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 WASH3PC4AMC7 463 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 AKR1B10O60218 316 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 RNF8O76064 485 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 ASLP04424 464 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 GGCXP38435 758 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 IL12RB1P42701 662 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 PLK1P53350 603 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 ST8SIA6P61647 398 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 NRG1Q02297 640 aaPredicted RBP15.48■□□□□ 0.07
UPF1-202ENST00000594243 GFPT1Q06210 699 aaPredicted RBP15.48■□□□□ 0.07
UPF1-202ENST00000594243 ZNF234Q14588 700 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 STARD3Q14849 445 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 ACAP1Q15027 740 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 FUT11Q495W5 492 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 PITRM1Q5JRX3 1037 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 RASSF3Q86WH2 238 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 CIR1Q86X95 450 aaPredicted RBP15.48■□□□□ 0.07
UPF1-202ENST00000594243 ZNF683Q8IZ20 524 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 PGBD3Q8N328 593 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 ZYG11BQ9C0D3 744 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 THAP2Q9H0W7 228 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 TBC1D30Q9Y2I9 924 aa15.48■□□□□ 0.07
UPF1-202ENST00000594243 A0A1W2PQF6 199 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 TCRBV21S2A2A0A5A6 115 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 SYNCRIPO60506 623 aaKnown RBP15.47■□□□□ 0.07
UPF1-202ENST00000594243 LMNAP02545 664 aaKnown RBP15.47■□□□□ 0.07
UPF1-202ENST00000594243 HOXC13P31276 330 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 OGDHQ02218 1023 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 SULT2A1Q06520 285 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 SCAPQ12770 1279 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 ASTE1Q2TB18 679 aaPredicted RBP15.47■□□□□ 0.07
UPF1-202ENST00000594243 FNDC3BQ53EP0 1204 aaKnown RBP15.47■□□□□ 0.07
UPF1-202ENST00000594243 USP39Q53GS9 565 aaKnown RBP15.47■□□□□ 0.07
UPF1-202ENST00000594243 EFHC2Q5JST6 749 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 ANO7Q6IWH7 933 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 SERPINA13PQ6UXR4 307 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 SETD3Q86TU7 594 aaPredicted RBP15.47■□□□□ 0.07
UPF1-202ENST00000594243 CCDC185Q8N715 623 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 CYB5D2Q8WUJ1 264 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 SORCS1Q8WY21 1168 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 CHP1Q99653 195 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 NHEJ1Q9H9Q4 299 aaPredicted RBP15.47■□□□□ 0.07
UPF1-202ENST00000594243 BCCIPQ9P287 314 aaKnown RBP eCLIP15.47■□□□□ 0.07
UPF1-202ENST00000594243 SUN2Q9UH99 717 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 INTS6Q9UL03 887 aaKnown RBP15.47■□□□□ 0.07
UPF1-202ENST00000594243 SNX10Q9Y5X0 201 aa15.47■□□□□ 0.07
UPF1-202ENST00000594243 HRO43593 1189 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 CNTN5O94779 1100 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 CYP1A2P05177 515 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 EPHX1P07099 455 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 SRPRAP08240 638 aaKnown RBP15.46■□□□□ 0.07
UPF1-202ENST00000594243 H2AFZP0C0S5 128 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 OR1E1P30953 314 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 NNMTP40261 264 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 CSKP41240 450 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 IRAK1P51617 712 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 GALCP54803 685 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 BYSLQ13895 437 aaKnown RBP15.46■□□□□ 0.07
UPF1-202ENST00000594243 SIM2Q14190 667 aaPredicted RBP15.46■□□□□ 0.07
UPF1-202ENST00000594243 PIGHQ14442 188 aaPredicted RBP15.46■□□□□ 0.07
UPF1-202ENST00000594243 PTPRNQ16849 979 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 PLEKHG6Q3KR16 790 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 ALFQ53S48 1182 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 C6orf118Q5T5N4 469 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 RNF219Q5W0B1 726 aaPredicted RBP15.46■□□□□ 0.07
UPF1-202ENST00000594243 CXorf57Q6NSI4 855 aaKnown RBP15.46■□□□□ 0.07
UPF1-202ENST00000594243 H2AFVQ71UI9 128 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 APCDD1Q8J025 514 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 KDM1BQ8NB78 822 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 MDGA1Q8NFP4 955 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 HMGB4Q8WW32 186 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 GAB3Q8WWW8 586 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 FEM1AQ9BSK4 669 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 EPC1Q9H2F5 836 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 TMEM245Q9H330 911 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 MPP6Q9NZW5 540 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 RAB23Q9ULC3 237 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 FZD10Q9ULW2 581 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 NENFQ9UMX5 172 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 RAD54BQ9Y620 910 aa15.46■□□□□ 0.07
UPF1-202ENST00000594243 USP34Q70CQ2 3546 aa15.46■□□□□ 0.06
UPF1-202ENST00000594243 RPP40O75818 363 aaKnown RBP15.45■□□□□ 0.06
UPF1-202ENST00000594243 MZF1P28698 734 aaPredicted RBP15.45■□□□□ 0.06
UPF1-202ENST00000594243 L1CAMP32004 1257 aa15.45■□□□□ 0.06
UPF1-202ENST00000594243 KRT83P78385 493 aa15.45■□□□□ 0.06
UPF1-202ENST00000594243 ECT2LQ008S8 904 aa15.45■□□□□ 0.06
UPF1-202ENST00000594243 ERMARDQ5T6L9 678 aa15.45■□□□□ 0.06
UPF1-202ENST00000594243 CEP68Q76N32 757 aa15.45■□□□□ 0.06
UPF1-202ENST00000594243 TC2NQ8N9U0 490 aa15.45■□□□□ 0.06
UPF1-202ENST00000594243 CTNNBL1Q8WYA6 563 aaPredicted RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms