RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 CCL16O15467 120 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 COCHO43405 550 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 ACSL4O60488 711 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 OPHN1O60890 802 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 VNN2O95498 520 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 OAS1P00973 400 aaKnown RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 SPATA31D3P0C874 917 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 MYZAPP0CAP1 466 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 RHOQP17081 205 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 HDCP19113 662 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 TACR2P21452 398 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 ATP5DP30049 168 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 OR1E1P30953 314 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 CORO1AP31146 461 aaKnown RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 HOXC13P31276 330 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 CHKAP35790 457 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 RPL21P46778 160 aaKnown RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 MAPKAPK2P49137 400 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 CARSP49589 748 aaKnown RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 CLCN4P51793 760 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 ITGA8P53708 1063 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 ARL4CP56559 192 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 ERVK-21P61565 698 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 FAM193AP78312 1265 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 SEMA3BQ13214 749 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 DPYSQ14117 519 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 CASP8Q14790 479 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 SHHQ15465 462 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 HIF1AQ16665 826 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 DNAJC21Q5F1R6 531 aaKnown RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 MS4A13Q5J8X5 152 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 C9orf50Q5SZB4 431 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 C6orf118Q5T5N4 469 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 RAP1GAP2Q684P5 730 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 NPNTQ6UXI9 565 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 SPATA31D4Q6ZUB0 917 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 CCDC13Q8IYE1 715 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 PDIK1LQ8N165 341 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 MREGQ8N565 214 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 PQLC3Q8N755 202 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 RTL3Q8N8U3 475 aaKnown RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 FAM71DQ8N9W8 422 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 HJURPQ8NCD3 748 aaPredicted RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 TTC16Q8NEE8 873 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 SPPL3Q8TCT6 385 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 AENQ8WTP8 325 aaKnown RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 SEC14L1Q92503 715 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 EXOC4Q96A65 974 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 CCDC77Q9BR77 488 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 HERPUD2Q9BSE4 406 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 PHACTR1Q9C0D0 580 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 STMN4Q9H169 189 aaPredicted RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 TLE6Q9H808 572 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 SFXN1Q9H9B4 322 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 MED4Q9NPJ6 270 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 OSER1Q9NX31 292 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 MTMR10Q9NXD2 777 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 DTLQ9NZJ0 730 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 CALCOCO1Q9P1Z2 691 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 SAE1Q9UBE0 346 aaPredicted RBP6.36□□□□□ -1.39
LIG3-206ENST00000586058 RSPH14Q9UHP6 348 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 TRHDEQ9UKU6 1024 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 HPCAL4Q9UM19 191 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 ATP8A1Q9Y2Q0 1164 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 NR2E1Q9Y466 385 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 HS3ST4Q9Y661 456 aa6.36□□□□□ -1.39
LIG3-206ENST00000586058 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 A0A0A0MRY4 1105 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 A0A1B0GVM2 712 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 TCAF2A6NFQ2 919 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 ERI2A8K979 691 aaKnown RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 RNF103O00237 685 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 EIF3HO15372 352 aaKnown RBP eCLIP6.35□□□□□ -1.39
LIG3-206ENST00000586058 PSMD3O43242 534 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 RAMP2O60895 175 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 LILRB3O75022 631 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 CLDN11O75508 207 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 MAP3K6O95382 1288 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 IGLV3-27P01718 113 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 RHOCP08134 193 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 HMGA1P17096 107 aaKnown RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 CCNCP24863 283 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 RBL1P28749 1068 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 GGCXP38435 758 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 GARSP41250 739 aaKnown RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 NDST2P52849 883 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 PMS2P54278 862 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 MLLT6P55198 1093 aaPredicted RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 CDH4P55283 916 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 OXCT1P55809 520 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 EIF3BP55884 814 aaKnown RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 YBEYP58557 167 aaPredicted RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 ERVFC1P60507 584 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 SMAD3P84022 425 aaKnown RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 CYP4F8P98187 520 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 GBE1Q04446 702 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 DHX9Q08211 1270 aaKnown RBP6.35□□□□□ -1.39
LIG3-206ENST00000586058 ADCY2Q08462 1091 aa6.35□□□□□ -1.39
LIG3-206ENST00000586058 PPIDQ08752 370 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms