RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 PCSK1NQ9UHG2 260 aa13.04□□□□□ -0.32
VMP1-202ENST00000585847 DRG1Q9Y295 367 aaKnown RBP13.04□□□□□ -0.32
VMP1-202ENST00000585847 SYNJ2BP-COX16A0A087WUM0 186 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 E2F8A0AVK6 867 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 APOL1O14791 398 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 MCF2LO15068 1137 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 FGF10O15520 208 aaPredicted RBP13.03□□□□□ -0.32
VMP1-202ENST00000585847 APOEP02649 317 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 ITGAVP06756 1048 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 PSMC3P17980 439 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 CORO1AP31146 461 aaKnown RBP13.03□□□□□ -0.32
VMP1-202ENST00000585847 L1CAMP32004 1257 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 SERPINB6P35237 376 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 GJC1P36383 396 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 CAV1Q03135 178 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 ZNF33AQ06730 810 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 C2orf54Q08AI8 447 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 NME3Q13232 169 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 XRCC4Q13426 336 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 DPYSL3Q14195 570 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 ELF2Q15723 593 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 ZC3H12AQ5D1E8 599 aaKnown RBP13.03□□□□□ -0.32
VMP1-202ENST00000585847 DAB2IPQ5VWQ8 1189 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 SLC9A4Q6AI14 798 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 TRIM68Q6AZZ1 485 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 NADSYN1Q6IA69 706 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 MFSD7Q6UXD7 560 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 CYP4V2Q6ZWL3 525 aaPredicted RBP13.03□□□□□ -0.32
VMP1-202ENST00000585847 MTERF4Q7Z6M4 381 aaKnown RBP13.03□□□□□ -0.32
VMP1-202ENST00000585847 FAM217AQ8IXS0 508 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 KIAA1958Q8N8K9 716 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 CCDC89Q8N998 374 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 DEPDC1BQ8WUY9 529 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 SEC14L1Q92503 715 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 RAPGEF5Q92565 580 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 E2F7Q96AV8 911 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 MYEOVQ96EZ4 313 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 KRT12Q99456 494 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 CALN1Q9BXU9 219 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 MAGEB5Q9BZ81 275 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 NACA2Q9H009 215 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 IRF2BPLQ9H1B7 796 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 WDCPQ9H6R7 721 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 PCDH18Q9HCL0 1135 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 ARHGEF38Q9NXL2 777 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 COX16Q9P0S2 106 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 STOML2Q9UJZ1 356 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 AGO1Q9UL18 857 aaKnown RBP13.03□□□□□ -0.32
VMP1-202ENST00000585847 FZD10Q9ULW2 581 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 WNT6Q9Y6F9 365 aa13.03□□□□□ -0.32
VMP1-202ENST00000585847 OTOL1A6NHN0 477 aaPredicted RBP13.02□□□□□ -0.33
VMP1-202ENST00000585847 SHISA7A6NL88 538 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 LATS1O95835 1130 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 ARSAP15289 507 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 TCF4P15884 667 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 STIP1P31948 543 aaKnown RBP13.02□□□□□ -0.33
VMP1-202ENST00000585847 COILP38432 576 aaPredicted RBP13.02□□□□□ -0.33
VMP1-202ENST00000585847 GAB4Q2WGN9 574 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 EML3Q32P44 896 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 FAM133BQ5BKY9 247 aaKnown RBP13.02□□□□□ -0.33
VMP1-202ENST00000585847 EMBQ6PCB8 327 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 CCDC137Q6PK04 289 aaKnown RBP13.02□□□□□ -0.33
VMP1-202ENST00000585847 DDX42Q86XP3 938 aaKnown RBP eCLIP13.02□□□□□ -0.33
VMP1-202ENST00000585847 LRRC49Q8IUZ0 686 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 UNC45BQ8IWX7 931 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 CCDC105Q8IYK2 499 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 LZTR1Q8N653 840 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 OSCP1Q8WVF1 389 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 ANKRD7Q92527 254 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 HSPH1Q92598 858 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 ATOH1Q92858 354 aaPredicted RBP13.02□□□□□ -0.33
VMP1-202ENST00000585847 AZIN2Q96A70 460 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 RNF25Q96BH1 459 aaPredicted RBP13.02□□□□□ -0.33
VMP1-202ENST00000585847 CHFRQ96EP1 664 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 C1orf74Q96LT6 269 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 RNF157Q96PX1 679 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 PEBP4Q96S96 227 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 AP1M1Q9BXS5 423 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 FOXP3Q9BZS1 431 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 DCLK3Q9C098 648 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 SH3BP1Q9Y3L3 701 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 KMT2EQ8IZD2 1858 aa13.02□□□□□ -0.33
VMP1-202ENST00000585847 MIA3Q5JRA6 1907 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 DOCK4Q8N1I0 1966 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 GOLGA6L7A0A1B0GV03 622 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 HACD1B0YJ81 288 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 CHADO15335 359 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 MTSS1O43312 755 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 LIASO43766 372 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 HEXIM1O94992 359 aaKnown RBP13.01□□□□□ -0.33
VMP1-202ENST00000585847 MX2P20592 715 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 GDI1P31150 447 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 SLC6A4P31645 630 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 VCPP55072 806 aaKnown RBP13.01□□□□□ -0.33
VMP1-202ENST00000585847 TNK2Q07912 1038 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 SEMA3BQ13214 749 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 BYSLQ13895 437 aaKnown RBP13.01□□□□□ -0.33
VMP1-202ENST00000585847 SIX1Q15475 284 aaPredicted RBP13.01□□□□□ -0.33
VMP1-202ENST00000585847 SMTNL2Q2TAL5 461 aa13.01□□□□□ -0.33
VMP1-202ENST00000585847 KCNT1Q5JUK3 1230 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms