RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 CTAGE3PQ8IX95 158 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 C4orf33Q8N1A6 199 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 PPM1NQ8N819 430 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 DBF4BQ8NFT6 615 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 SCAMP5Q8TAC9 235 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 MZB1Q8WU39 189 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 CDKL2Q92772 493 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 TTC17Q96AE7 1141 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 MRRFQ96E11 262 aaKnown RBP11.56□□□□□ -0.56
LIG3-204ENST00000585740 C1orf74Q96LT6 269 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 CEP295NLQ96MC4 621 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 ACTR5Q9H9F9 607 aaPredicted RBP11.56□□□□□ -0.56
LIG3-204ENST00000585740 ANLNQ9NQW6 1124 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 IL37Q9NZH6 218 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 MAD1L1Q9Y6D9 718 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 GREB1Q4ZG55 1949 aa11.56□□□□□ -0.56
LIG3-204ENST00000585740 MICAL3Q7RTP6 2002 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 A0A1W2PPM1 405 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 A0A1W2PQH9 124 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 FAM159BA6NKW6 160 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 WASH4PA8MWX3 477 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 AP2A1O95782 977 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 OR4Q2P0C623 313 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 SRGAP2BP0DMP2 458 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 PGAM1P18669 254 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 KRT4P19013 534 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 CCNCP24863 283 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 WDR4P57081 412 aaKnown RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 RPL10AP62906 217 aaKnown RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 IFT88Q13099 833 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 DNAJC3Q13217 504 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 FRG1Q14331 258 aaKnown RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 PDK4Q16654 411 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 TEX44Q53QW1 395 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 SPANXN3Q5MJ09 141 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 SYCP2LQ5T4T6 812 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 RNF187Q5TA31 235 aaPredicted RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 FAM171A1Q5VUB5 890 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 TIGD7Q6NT04 549 aaPredicted RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 FUT10Q6P4F1 479 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 ANKS3Q6ZW76 656 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 AGGF1Q8N302 714 aaeCLIP11.55□□□□□ -0.56
LIG3-204ENST00000585740 PDCD7Q8N8D1 485 aaKnown RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 BANPQ8N9N5 519 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 GDAP1Q8TB36 358 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 LRRC8CQ8TDW0 803 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 LRRN4Q8WUT4 740 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 APOPT1Q96IL0 206 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 SPATA17Q96L03 361 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 PAIP2Q9BPZ3 127 aaKnown RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 ELAC2Q9BQ52 826 aaKnown RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 GBA3Q9H227 469 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 KDM4CQ9H3R0 1056 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 MKS1Q9NXB0 559 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 CLIC5Q9NZA1 410 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 DNAJB4Q9UDY4 337 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 TLR6Q9Y2C9 796 aa11.55□□□□□ -0.56
LIG3-204ENST00000585740 USP15Q9Y4E8 981 aaPredicted RBP11.55□□□□□ -0.56
LIG3-204ENST00000585740 DOCK4Q8N1I0 1966 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 FAM92AA1XBS5 289 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 MAGEB16A2A368 324 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 KCNU1A8MYU2 1149 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 F8W810 466 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 I6L893 689 aaPredicted RBP11.54□□□□□ -0.56
LIG3-204ENST00000585740 MYO1CO00159 1063 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 SNX3O60493 162 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 PAGE1O75459 146 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 ALDH1A2O94788 518 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 OAS1P00973 400 aaKnown RBP11.54□□□□□ -0.56
LIG3-204ENST00000585740 CXCL10P02778 98 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 TAC1P20366 129 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 YWHAQP27348 245 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 MAGEA9P43362 315 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 NPY2RP49146 381 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 SLC11A1P49279 550 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 FAAP100Q0VG06 881 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 GPR17Q13304 367 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 MANEALQ5VSG8 457 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 ARMC3Q5W041 872 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 RWDD4Q6NW29 188 aaKnown RBP11.54□□□□□ -0.56
LIG3-204ENST00000585740 MARK2Q7KZI7 788 aaKnown RBP11.54□□□□□ -0.56
LIG3-204ENST00000585740 LINC00523Q86TU6 105 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 TRIM42Q8IWZ5 723 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 LRRC43Q8N309 656 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 ATPAF2Q8N5M1 289 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 CCDC33Q8N5R6 958 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 ATP6V0D2Q8N8Y2 350 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 DEPDC1BQ8WUY9 529 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 CASP10Q92851 521 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 TEKT5Q96M29 485 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 DEFB118Q96PH6 123 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 CDK5RAP1Q96SZ6 601 aaKnown RBP11.54□□□□□ -0.56
LIG3-204ENST00000585740 GDF15Q99988 308 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 LRRC40Q9H9A6 602 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 PAK6Q9NQU5 681 aaPredicted RBP11.54□□□□□ -0.56
LIG3-204ENST00000585740 TLR8Q9NR97 1041 aaKnown RBP11.54□□□□□ -0.56
LIG3-204ENST00000585740 MARCH5Q9NX47 278 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 MOCS1Q9NZB8 636 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 BFARQ9NZS9 450 aa11.54□□□□□ -0.56
LIG3-204ENST00000585740 OGDHLQ9ULD0 1010 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms