RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SYT13Q7L8C5 426 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 FOXP4Q8IVH2 680 aaPredicted RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 LINC01465Q8N7H1 131 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 PTGR2Q8N8N7 351 aaPredicted RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 SRFBP1Q8NEF9 429 aaKnown RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 CSGALNACT1Q8TDX6 532 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 RILPL2Q969X0 211 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 KTI12Q96EK9 354 aaPredicted RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 DAZAP1Q96EP5 407 aaKnown RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 EDC3Q96F86 508 aaKnown RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 MPP4Q96JB8 637 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 LENG8Q96PV6 779 aaPredicted RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 FYTTD1Q96QD9 318 aaKnown RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 TWNKQ96RR1 684 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 CTAGE1Q96RT6 745 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 SEC62Q99442 399 aaKnown RBP4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 NPAS1Q99742 590 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 MECRQ9BV79 373 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 ABHD16BQ9H3Z7 469 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 ZHX3Q9H4I2 956 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 CHODLQ9H9P2 273 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 SAP30LQ9HAJ7 183 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 USP29Q9HBJ7 922 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 KCND3Q9UK17 655 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 FZD4Q9ULV1 537 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 CRYL1Q9Y2S2 319 aa4.17□□□□□ -1.74
SMCHD1-209ENST00000583441 BTBD19C9JJ37 291 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 SOCS2O14508 198 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 EPB41L2O43491 1005 aaKnown RBP4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 CNTFP26441 200 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 SLC8A1P32418 973 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 RCAN1P53805 252 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 TAS2R50P59544 299 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 RPL15P61313 204 aaKnown RBP4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 RAE1P78406 368 aaKnown RBP4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 CHRNDQ07001 517 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 DCTN1Q14203 1278 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 ERV3-1Q14264 604 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 SEMA3AQ14563 771 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 CNGA3Q16281 694 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 CEP78Q5JTW2 689 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 VSTM1Q6UX27 236 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 C16orf89Q6UX73 402 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 TRIM72Q6ZMU5 477 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 TMTC1Q8IUR5 882 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 CPOQ8IVL8 374 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 ANKRD44Q8N8A2 993 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 TERB1Q8NA31 727 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 ASB12Q8WXK4 309 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 MCRS1Q96EZ8 462 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 HIC2Q96JB3 615 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 MAELQ96JY0 434 aaKnown RBP4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 LYZL4Q96KX0 146 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 HS6ST2Q96MM7 605 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 MMS19Q96T76 1030 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 CIPCQ9C0C6 399 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 ABHD10Q9NUJ1 306 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 TRPC5Q9UL62 973 aaPredicted RBP4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 ASAP1Q9ULH1 1129 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 MAFFQ9ULX9 164 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 SUFUQ9UMX1 484 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 PCDHB2Q9Y5E7 798 aa4.16□□□□□ -1.74
SMCHD1-209ENST00000583441 CYP3A7-CYP3A51PA0A087WV96 503 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 KCNU1A8MYU2 1149 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 PRRT4C9JH25 899 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 J3KRW8 73 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 M0QZQ0 153 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 PRAMEF2O60811 474 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 JTBO76095 146 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 MT-CO3P00414 261 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 POLBP06746 335 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 IGFBP2P18065 325 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 CYP3A7P24462 503 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 FPR3P25089 353 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 GALNSP34059 522 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 PNPLA4P41247 253 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 WDR5P61964 334 aaKnown RBP4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 HOXA4Q00056 320 aaPredicted RBP4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 DDX10Q13206 875 aaKnown RBP4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 RNASE12Q5GAN4 147 aaKnown RBP4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 KRTAP5-2Q701N4 177 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 ESX1Q8N693 406 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 AKAP1Q92667 903 aaKnown RBP eCLIP4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 EIF2AK1Q9BQI3 630 aaKnown RBP4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 HTATIP2Q9BUP3 242 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 JMJD4Q9H9V9 463 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 UBN1Q9NPG3 1134 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 TMEM160Q9NX00 188 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 RAB21Q9UL25 225 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 SLC12A4Q9UP95 1085 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 DNAJC16Q9Y2G8 782 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 AFG3L2Q9Y4W6 797 aa4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 SIRT4Q9Y6E7 314 aaPredicted RBP4.15□□□□□ -1.75
SMCHD1-209ENST00000583441 FAM90A10PA6NDY2 464 aa4.14□□□□□ -1.75
SMCHD1-209ENST00000583441 UBE2Q2LH0YL09 131 aa4.14□□□□□ -1.75
SMCHD1-209ENST00000583441 M0QYT0 321 aa4.14□□□□□ -1.75
SMCHD1-209ENST00000583441 EYA2O00167 538 aa4.14□□□□□ -1.75
SMCHD1-209ENST00000583441 HEXIM1O94992 359 aaKnown RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms