RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 MARCKSL1P49006 195 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 ZNF143P52747 638 aaPredicted RBP10.53□□□□□ -0.72
SS18-207ENST00000577636 RING1Q06587 406 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 SMARCB1Q12824 385 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 TRIM61Q5EBN2 209 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 DCAF12L1Q5VU92 463 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 PMF1Q6P1K2 205 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 C4orf50Q6ZRC1 276 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 FAM183BPQ6ZVS7 135 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 OSTM1Q86WC4 334 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 SLC13A5Q86YT5 568 aaPredicted RBP10.53□□□□□ -0.72
SS18-207ENST00000577636 SCN4BQ8IWT1 228 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 SCUBE3Q8IX30 993 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 TMEFF1Q8IYR6 380 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 PGBD3Q8N328 593 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 MYCBPAPQ8TBZ2 947 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 OSCP1Q8WVF1 389 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.53□□□□□ -0.726e-8■■■■□ 26.7
SS18-207ENST00000577636 SLC22A12Q96S37 553 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 TMEM121BQ9BXQ6 578 aaPredicted RBP10.53□□□□□ -0.72
SS18-207ENST00000577636 NUSAP1Q9BXS6 441 aaKnown RBP10.53□□□□□ -0.72
SS18-207ENST00000577636 ACBD3Q9H3P7 528 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 SLC32A1Q9H598 525 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 WASF3Q9UPY6 502 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 ABCA7Q8IZY2 2146 aa10.52□□□□□ -0.72
SS18-207ENST00000577636 SPAARA0A1B0GVQ0 90 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 TMEM8BA6NDV4 472 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 FAM187AA6NFU0 413 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 F8VP50 259 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 PRPSAP2O60256 369 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 AP1G2O75843 785 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 TJP3O95049 919 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 PCK1P35558 622 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 TIE1P35590 1138 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 CLCN6P51797 869 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 DR1Q01658 176 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 GUCY2DQ02846 1103 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 GPS2Q13227 327 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 CUL1Q13616 776 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 ZNF77Q15935 545 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 EML3Q32P44 896 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 OLFML1Q6UWY5 402 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 ARCQ7LC44 396 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 ADAT2Q7Z6V5 191 aaKnown RBP10.52□□□□□ -0.73
SS18-207ENST00000577636 FAM35AQ86V20 835 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 C11orf74Q86VG3 221 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 MAP7D3Q8IWC1 876 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 DEFB119Q8N690 84 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 EMC1Q8N766 993 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 FRMD1Q8N878 549 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 KCTD6Q8NC69 237 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 MDGA1Q8NFP4 955 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 JOSD2Q8TAC2 188 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 SH3RF2Q8TEC5 729 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 USP33Q8TEY7 942 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 GRK7Q8WTQ7 553 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 RXFP2Q8WXD0 754 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 KCTD13Q8WZ19 329 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 GATA6Q92908 595 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 MAGOHBQ96A72 148 aaKnown RBP10.52□□□□□ -0.73
SS18-207ENST00000577636 SMARCD1Q96GM5 515 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 PNKPQ96T60 521 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 TRIM62Q9BVG3 475 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 UBXN6Q9BZV1 441 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 FSCN3Q9NQT6 498 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 KRT82Q9NSB4 513 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 BCCIPQ9P287 314 aaKnown RBP eCLIP10.52□□□□□ -0.73
SS18-207ENST00000577636 UXTQ9UBK9 157 aaPredicted RBP10.52□□□□□ -0.73
SS18-207ENST00000577636 KLK13Q9UKR3 277 aa10.52□□□□□ -0.73
SS18-207ENST00000577636 NUP210Q8TEM1 1887 aaPredicted RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 LRRD1A4D1F6 860 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 C2orf78A6NCI8 922 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 K7EQS6 105 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 PIK3R2O00459 728 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 SCAMP3O14828 347 aaKnown RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 HSF2BPO75031 334 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 ATP2C2O75185 946 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 ALDH1A2O94788 518 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 GAS8O95995 478 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 CFIP05156 583 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 GLI1P08151 1106 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 HDCP19113 662 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 TNFRSF8P28908 595 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 TNNT3P45378 269 aaPredicted RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 FNTAP49354 379 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 ATXN3P54252 364 aaPredicted RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 MAP3K7CLP57077 242 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 TAS2R40P59535 323 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 VSNL1P62760 191 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 RPL10AP62906 217 aaKnown RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 SIM1P81133 766 aaPredicted RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 LMAN2Q12907 356 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 NFE2Q16621 373 aaPredicted RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 TFDP3Q5H9I0 405 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 INTS6LQ5JSJ4 861 aaKnown RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 CCNI2Q6ZMN8 369 aaPredicted RBP10.51□□□□□ -0.73
SS18-207ENST00000577636 LPCAT2Q7L5N7 544 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 SLC26A9Q7LBE3 791 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 HDXQ7Z353 690 aa10.51□□□□□ -0.73
SS18-207ENST00000577636 PIGZQ86VD9 579 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms