RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PEX11AO75192 247 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 GLRA3O75311 464 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 DUSP11O75319 330 aaKnown RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 AP2A1O95782 977 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 F9P00740 461 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 CHRNA1P02708 482 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 C6orf222P0C671 652 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 CALRP27797 417 aaKnown RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 STX3Q13277 289 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 PDE1CQ14123 709 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 FASTKD1Q53R41 847 aaKnown RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 AGMOQ6ZNB7 445 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 CTU1Q7Z7A3 348 aaKnown RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 RSPH3Q86UC2 560 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 ALYREFQ86V81 257 aaKnown RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 NPWQ8N729 165 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 SOCS4Q8WXH5 440 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 CERS2Q96G23 380 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 MTG1Q9BT17 334 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 NMUR2Q9GZQ4 415 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 RNPEPL1Q9HAU8 725 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 THAP1Q9NVV9 213 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 ZFATQ9P243 1243 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 DCDC2Q9UHG0 476 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 GSC2O15499 205 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 MTSS1O43312 755 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 CTSHP09668 335 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 ERVK-10P10266 1014 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 PCSK1P29120 753 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 CXCR3P49682 368 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 SCNN1GP51170 649 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 ZNF135P52742 658 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 HUNKP57058 714 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 GALNT2Q10471 571 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 OLIG2Q13516 323 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 UPP1Q16831 310 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 TIGD5Q53EQ6 642 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 GNASQ5JWF2 1037 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 N4BP2L1Q5TBK1 243 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 KCTD11Q693B1 232 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 GDF6Q6KF10 455 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 C16orf46Q6P387 395 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 CES3Q6UWW8 571 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 RASSF3Q86WH2 238 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 OR52K1Q8NGK4 314 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 SH3TC2Q8TF17 1288 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 NSMCE1Q8WV22 266 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 ATP2A3Q93084 1043 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 HDAC11Q96DB2 347 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 FCRL3Q96P31 734 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 AGAP3Q96P47 875 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 RTP3Q9BQQ7 232 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 PAAF1Q9BRP4 392 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 WWP1Q9H0M0 922 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 DENND2DQ9H6A0 471 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 WDCPQ9H6R7 721 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 LRRC40Q9H9A6 602 aa10.33□□□□□ -0.76
VPS53-220ENST00000576149 NKX1-2Q9UD57 310 aaPredicted RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 HBS1LQ9Y450 684 aaKnown RBP10.33□□□□□ -0.76
VPS53-220ENST00000576149 MANSC4A6NHS7 340 aaPredicted RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 CASTOR2A6NHX0 329 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 ERI2A8K979 691 aaKnown RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 ZBTB24O43167 697 aaPredicted RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 PLIN3O60664 434 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 ESRRAP11474 423 aaPredicted RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 MX2P20592 715 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 CD68P34810 354 aaPredicted RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 GP5P40197 560 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 CCNG1P51959 295 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 AQP5P55064 265 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 IRX4P78413 519 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 INSCQ1MX18 579 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 MBLAC2Q68D91 279 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 CXCL17Q6UXB2 119 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 C4orf50Q6ZRC1 276 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 ZCCHC23Q6ZST2 131 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 MRPL10Q7Z7H8 261 aaKnown RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 TMEM135Q86UB9 458 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 TRPV1Q8NER1 839 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 IRGQQ8WZA9 623 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 EDEM1Q92611 657 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 EPAS1Q99814 870 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 CPNE1Q99829 537 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 RHOBTB2Q9BYZ6 727 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 GBA3Q9H227 469 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 CASS4Q9NQ75 786 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 TAS2R1Q9NYW7 299 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 IL1RAPL1Q9NZN1 696 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 BFARQ9NZS9 450 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 TXNDC16Q9P2K2 825 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 OR12D3Q9UGF7 316 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 TRHDEQ9UKU6 1024 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 VANGL2Q9ULK5 521 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 ZNF638Q14966 1978 aaKnown RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 CAPN14A8MX76 684 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 GYG2O15488 501 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 DIAPH2O60879 1101 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 USP12O75317 370 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 PRKCGP05129 697 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 ATP5BP06576 529 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms