RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PRMT1Q99873 361 aaKnown RBP21.26■□□□□ 0.99
VPS53-210ENST00000571456 KIAA1549LQ6ZVL6 1849 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 FLNBO75369 2602 aaKnown RBP21.25■□□□□ 0.99
VPS53-210ENST00000571456 OTOL1A6NHN0 477 aaPredicted RBP21.25■□□□□ 0.99
VPS53-210ENST00000571456 C1QTNF9BB2RNN3 333 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 SCAMP3O14828 347 aaKnown RBP21.25■□□□□ 0.99
VPS53-210ENST00000571456 PJA2O43164 708 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 HRO43593 1189 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 PRPSAP2O60256 369 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 C1QTNF9P0C862 333 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 DRD1P21728 446 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 OXCT1P55809 520 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 FBXO43Q4G163 708 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 AASDHQ4L235 1098 aaPredicted RBP21.25■□□□□ 0.99
VPS53-210ENST00000571456 BOLA3Q53S33 107 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 EFHC2Q5JST6 749 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 FYB2Q5VWT5 728 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 NADSYN1Q6IA69 706 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 TPGS1Q6ZTW0 290 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 ETFBKMTQ8IXQ9 262 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 SYNPOQ8N3V7 929 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 CD101Q93033 1021 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 P2RY13Q9BPV8 354 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 DEC1Q9P2X7 70 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 FBXO10Q9UK96 956 aa21.25■□□□□ 0.99
VPS53-210ENST00000571456 NEDD8-MDP1E9PL57 170 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 LRCH4O75427 683 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 PROSCO94903 275 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 CNR2P34972 360 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 SLC1A1P43005 524 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 ZNF252P-AS1Q0IIN9 211 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 GRSF1Q12849 480 aaKnown RBP eCLIP21.24■□□□□ 0.994e-9■■■■■ 30.8
VPS53-210ENST00000571456 AUHQ13825 339 aaKnown RBP21.24■□□□□ 0.99
VPS53-210ENST00000571456 LRRC32Q14392 662 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 IFI16Q16666 785 aaKnown RBP21.24■□□□□ 0.99
VPS53-210ENST00000571456 HADHQ16836 314 aaKnown RBP21.24■□□□□ 0.99
VPS53-210ENST00000571456 DGKKQ5KSL6 1271 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 SH3PXD2AQ5TCZ1 1133 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 RAP1GAP2Q684P5 730 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 SCYL2Q6P3W7 929 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 KIAA1328Q86T90 577 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 KDF1Q8NAX2 398 aaPredicted RBP21.24■□□□□ 0.99
VPS53-210ENST00000571456 UBE2Q2Q8WVN8 375 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 PPP1R9BQ96SB3 815 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 PNKPQ96T60 521 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 DONSONQ9NYP3 566 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 PPARGC1AQ9UBK2 798 aaKnown RBP21.24■□□□□ 0.99
VPS53-210ENST00000571456 SLC27A6Q9Y2P4 619 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 HS3ST4Q9Y661 456 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 DOCK4Q8N1I0 1966 aa21.24■□□□□ 0.99
VPS53-210ENST00000571456 DMXL2Q8TDJ6 3036 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 A0A0A0MRY4 1105 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 A0A1B0GVM2 712 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 TCAF2A6NFQ2 919 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 PTMAP06454 111 aaKnown RBP21.23■□□□□ 0.99
VPS53-210ENST00000571456 SLC6A4P31645 630 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 CXCL12P48061 93 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 CCDC173Q0VFZ6 552 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 KIF5AQ12840 1032 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 GAB4Q2WGN9 574 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 TMEM196Q5HYL7 178 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 CHST9Q7L1S5 443 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 LGI2Q8N0V4 545 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 TSGA10Q9BZW7 698 aa21.23■□□□□ 0.99
VPS53-210ENST00000571456 AKAP13Q12802 2813 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 IGLV3-10A0A075B6K4 115 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 CHURC1-FNTBB4DL54 471 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 TULP3O75386 442 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 CLDN11O75508 207 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 APODP05090 189 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 HOXD9P28356 352 aaPredicted RBP21.22■□□□□ 0.99
VPS53-210ENST00000571456 MIPP30301 263 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 L1CAMP32004 1257 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 OPRD1P41143 372 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 GRIA2P42262 883 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 FNTBP49356 437 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 SRSF5Q13243 272 aaKnown RBP21.22■□□□□ 0.99
VPS53-210ENST00000571456 ERMARDQ5T6L9 678 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 GRAMD4Q6IC98 578 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 FBXL22Q6P050 247 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 KCNV2Q8TDN2 545 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 TEKT4Q8WW24 435 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 RPRD1AQ96P16 312 aaPredicted RBP21.22■□□□□ 0.99
VPS53-210ENST00000571456 EPAS1Q99814 870 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 TRIM7Q9C029 511 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 SIK2Q9H0K1 926 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 LMAN1LQ9HAT1 526 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 OR12D3Q9UGF7 316 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 XPO7Q9UIA9 1087 aaKnown RBP21.22■□□□□ 0.99
VPS53-210ENST00000571456 FZD10Q9ULW2 581 aa21.22■□□□□ 0.99
VPS53-210ENST00000571456 WDFY3Q8IZQ1 3526 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 DRGXA6NNA5 263 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 KCNK5O95279 499 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 NOP2P46087 812 aaKnown RBP21.21■□□□□ 0.99
VPS53-210ENST00000571456 DGKGP49619 791 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 CDH4P55283 916 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 SATB1Q01826 763 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 SLC12A1Q13621 1099 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 RFWD3Q6PCD5 774 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 ZNF662Q6ZS27 426 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms