RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SLPIP03973 132 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 KRT6BP04259 564 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ABCB1P08183 1280 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 MTHFD1P11586 935 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 KRT10P13645 584 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 RPS2P15880 293 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 PRKACAP17612 351 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 M6PRP20645 277 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 MGAT1P26572 445 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 AXLP30530 894 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PTGS2P35354 604 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 HNF1BP35680 557 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 KRT20P35900 424 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ASMTP46597 345 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 MTNR1BP49286 362 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 FLT3LGP49771 235 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 CDKN1CP49918 316 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 PLCD1P51178 756 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PTTG1IPP53801 180 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ADARP55265 1226 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 MAP3K7CLP57077 242 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 RNASE9P60153 205 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 PRKCEQ02156 737 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 MCL1Q07820 350 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 DNAJC3Q13217 504 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PPP2R5CQ13362 524 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ZNF268Q14587 947 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 PPP1R7Q15435 360 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 STK11Q15831 433 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 MOGQ16653 247 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 KLHL38Q2WGJ6 581 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 INO80DQ53TQ3 878 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 MFSD14BQ5SR56 506 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ZNF658Q5TYW1 1059 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 FNDC7Q5VTL7 733 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PPP4R3AQ6IN85 833 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 METTL2BQ6P1Q9 378 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 WDR93Q6P2C0 686 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 CFAP161Q6P656 301 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 TMEM154Q6P9G4 183 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 TRIM65Q6PJ69 517 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 SLC30A10Q6XR72 485 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ZNF704Q6ZNC4 412 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 Q6ZVL8 140 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 HTR3DQ70Z44 454 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 FASTKD5Q7L8L6 764 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 KRT28Q7Z3Y7 464 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PPP1R42Q7Z4L9 355 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 NECAB2Q7Z6G3 386 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 SLC38A6Q8IZM9 456 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ANKRD44Q8N8A2 993 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 OR8H1Q8NGG4 311 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ZFP28Q8NHY6 868 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ANGPTL6Q8NI99 470 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 SLC35B2Q8TB61 432 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 CAGE1Q8TC20 777 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 AGAP11Q8TF27 550 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ATP8B4Q8TF62 1192 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 DPF2Q92785 391 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 HAS1Q92839 578 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ABTB1Q969K4 478 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 SGK3Q96BR1 496 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 RMDN1Q96DB5 314 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 COG8Q96MW5 612 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 GBP5Q96PP8 586 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 SORCS2Q96PQ0 1159 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 SMAD5Q99717 465 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 TSG101Q99816 390 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 APOL5Q9BWW9 433 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 SPATA16Q9BXB7 569 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 CRNKL1Q9BZJ0 848 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 UNKQ9C0B0 810 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 CCDC8Q9H0W5 538 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 KCNH6Q9H252 994 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ZNF768Q9H5H4 540 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 C8orf33Q9H7E9 229 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 DBNDD1Q9H9R9 158 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PPCSQ9HAB8 311 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 BCO1Q9HAY6 547 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 C8orf4Q9NR00 106 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 LANCL2Q9NS86 450 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 TMEM140Q9NV12 185 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ARMC1Q9NVT9 282 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 SLC39A1Q9NY26 324 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PTTG2Q9NZH5 202 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 IL37Q9NZH6 218 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 HACD3Q9P035 362 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 MBD2Q9UBB5 411 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 DBF4Q9UBU7 674 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 LAMP5Q9UJQ1 280 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 FBXO2Q9UK22 296 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 TRHDEQ9UKU6 1024 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 LIMCH1Q9UPQ0 1083 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 HBS1LQ9Y450 684 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 MYOM2P54296 1465 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ACEP12821 1306 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PDS5AQ29RF7 1337 aaKnown RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 MAP3K19Q56UN5 1328 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 NPHP3Q7Z494 1330 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms