RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SFMBT2Q5VUG0 894 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 MSANTD2Q6P1R3 559 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 KLHDC10Q6PID8 442 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 SLC36A4Q6YBV0 504 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 TMPRSS7Q7RTY8 843 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 DDX42Q86XP3 938 aaKnown RBP eCLIP14.4□□□□□ -0.1
CLN3-235ENST00000568497 CFAP52Q8N1V2 620 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 IPO4Q8TEX9 1081 aaKnown RBP14.4□□□□□ -0.1
CLN3-235ENST00000568497 GOLGA1Q92805 767 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 C18orf8Q96DM3 657 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 HSPA12BQ96MM6 686 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 SYT11Q9BT88 431 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 BBS2Q9BXC9 721 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 NUCKS1Q9H1E3 243 aaKnown RBP14.4□□□□□ -0.1
CLN3-235ENST00000568497 SPHK2Q9NRA0 654 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 STIM2Q9P246 746 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 LSM7Q9UK45 103 aaKnown RBP14.4□□□□□ -0.1
CLN3-235ENST00000568497 CEP83Q9Y592 693 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 TENM4Q6N022 2769 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 KALRNO60229 2985 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 I6L893 689 aaPredicted RBP14.39□□□□□ -0.11
CLN3-235ENST00000568497 DDX3XO00571 662 aaKnown RBP eCLIP14.39□□□□□ -0.111e-10■■■□□ 15.1
CLN3-235ENST00000568497 TULP3O75386 442 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 CHRM1P11229 460 aaPredicted RBP14.39□□□□□ -0.11
CLN3-235ENST00000568497 TYRP14679 529 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 FERP16591 822 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 TNFAIP3P21580 790 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 ITPKBP27987 946 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 CASP14P31944 242 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 SULT1E1P49888 294 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 COG7P83436 770 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 C15orf59Q2T9L4 293 aaPredicted RBP14.39□□□□□ -0.11
CLN3-235ENST00000568497 RAP1GAP2Q684P5 730 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 GLRX5Q86SX6 157 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 SCML4Q8N228 414 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 WFDC5Q8TCV5 224 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 CFAP57Q96MR6 1250 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 FCRL3Q96P31 734 aaPredicted RBP14.39□□□□□ -0.11
CLN3-235ENST00000568497 NOX5Q96PH1 765 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 SLC2A13Q96QE2 648 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 TBCBQ99426 244 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 POPDC2Q9HBU9 364 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 DNAJC17Q9NVM6 304 aaKnown RBP14.39□□□□□ -0.11
CLN3-235ENST00000568497 DDIT4Q9NX09 232 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 KIAA1522Q9P206 1035 aaPredicted RBP14.39□□□□□ -0.11
CLN3-235ENST00000568497 PCOLCE2Q9UKZ9 415 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 HCN2Q9UL51 889 aa14.39□□□□□ -0.11
CLN3-235ENST00000568497 FAM149AA5PLN7 773 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 M0QYT0 321 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 SLC9A3R1O14745 358 aaPredicted RBP14.38□□□□□ -0.11
CLN3-235ENST00000568497 IRAK2O43187 625 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 DAB1O75553 588 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 IGLV3-27P01718 113 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 APODP05090 189 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 RPS24P62847 133 aaKnown RBP14.38□□□□□ -0.11
CLN3-235ENST00000568497 ATP11AP98196 1134 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 MEA1Q16626 185 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 CDO1Q16878 200 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 CCDC157Q569K6 752 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 FAM133BQ5BKY9 247 aaKnown RBP14.38□□□□□ -0.11
CLN3-235ENST00000568497 FYB2Q5VWT5 728 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 C14orf80Q86SX3 495 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 TADA2BQ86TJ2 420 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 PHTF2Q8N3S3 785 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 GALNT15Q8N3T1 639 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 SORCS1Q8WY21 1168 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 PRICKLE1Q96MT3 831 aaPredicted RBP14.38□□□□□ -0.11
CLN3-235ENST00000568497 TRIM7Q9C029 511 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 PRDM16Q9HAZ2 1276 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 ARHGEF4Q9NR80 690 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 OLA1Q9NTK5 396 aaKnown RBP14.38□□□□□ -0.11
CLN3-235ENST00000568497 ADAM22Q9P0K1 906 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 TBC1D14Q9P2M4 693 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 SUSD2Q9UGT4 822 aa14.38□□□□□ -0.11
CLN3-235ENST00000568497 ARHGAP6O43182 974 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 HSF2BPO75031 334 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 ADCY5O95622 1261 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 LSM8O95777 96 aaKnown RBP14.37□□□□□ -0.11
CLN3-235ENST00000568497 ADH1CP00326 375 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 IGLV3-25P01717 112 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 GNSP15586 552 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 MMP8P22894 467 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 RRM1P23921 792 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 GABRB2P47870 512 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 ADKP55263 362 aaKnown RBP14.37□□□□□ -0.11
CLN3-235ENST00000568497 GAD2Q05329 585 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 KLHL30Q0D2K2 578 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 GRIK2Q13002 908 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 TDRD12Q587J7 1177 aaKnown RBP14.37□□□□□ -0.11
CLN3-235ENST00000568497 EFHC1Q5JVL4 640 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 HGSNATQ68CP4 663 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 LRRC69Q6ZNQ3 347 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 SLC26A9Q7LBE3 791 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 TMC6Q7Z403 805 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 LURAP1LQ8IV03 231 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 SLC41A1Q8IVJ1 513 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 ETFBKMTQ8IXQ9 262 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 ZNF276Q8N554 614 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 DDI1Q8WTU0 396 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 RXFP2Q8WXD0 754 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms