RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MAP3K13O43283 966 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 SYNCRIPO60506 623 aaKnown RBP15.51■□□□□ 0.07
VPS39-210ENST00000568357 LRP3O75074 770 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 ENDOD1O94919 500 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 CCDC172P0C7W6 258 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 PDGFRAP16234 1089 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 PBX1P40424 430 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 CTSOP43234 321 aaPredicted RBP15.51■□□□□ 0.07
VPS39-210ENST00000568357 COPAP53621 1224 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 TPM4P67936 248 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 ATP11AP98196 1134 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 MTA1Q13330 715 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 BYSLQ13895 437 aaKnown RBP15.51■□□□□ 0.07
VPS39-210ENST00000568357 E2F5Q15329 346 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 CSRP2Q16527 193 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 C5orf22Q49AR2 442 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 FNDC3BQ53EP0 1204 aaKnown RBP15.51■□□□□ 0.07
VPS39-210ENST00000568357 PITRM1Q5JRX3 1037 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 BRMS1LQ5PSV4 323 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 ARTNQ5T4W7 220 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 E4F1Q66K89 784 aaPredicted RBP15.51■□□□□ 0.07
VPS39-210ENST00000568357 PRR23CQ6ZRP0 262 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 SND1Q7KZF4 910 aaKnown RBP eCLIP15.51■□□□□ 0.07
VPS39-210ENST00000568357 MON1BQ7L1V2 547 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 TMPRSS6Q8IU80 811 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 CCDC117Q8IWD4 279 aaPredicted RBP15.51■□□□□ 0.07
VPS39-210ENST00000568357 TMEFF1Q8IYR6 380 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 ZNF683Q8IZ20 524 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 APCDD1Q8J025 514 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 MYO19Q96H55 970 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 MRGPRX3Q96LB0 322 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 SMOC1Q9H4F8 434 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 MTG2Q9H4K7 406 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 PRDM16Q9HAZ2 1276 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 TAS2R14Q9NYV8 317 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 AIPL1Q9NZN9 384 aa15.51■□□□□ 0.07
VPS39-210ENST00000568357 MYO18AQ92614 2054 aaKnown RBP15.51■□□□□ 0.07
VPS39-210ENST00000568357 IGHV1OR15-9A0A0B4J2B8 117 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 TCRBV5S1A1TA0A578 114 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 C2CD4BA6NLJ0 364 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 CNTN5O94779 1100 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 KRT3P12035 628 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 TNFAIP3P21580 790 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 MZF1P28698 734 aaPredicted RBP15.5■□□□□ 0.07
VPS39-210ENST00000568357 RDXP35241 583 aaKnown RBP15.5■□□□□ 0.07
VPS39-210ENST00000568357 RFC1P35251 1148 aaPredicted RBP15.5■□□□□ 0.07
VPS39-210ENST00000568357 NUMBP49757 651 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 UBASH3AP57075 661 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 CREB5Q02930 508 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 CAMK2GQ13555 558 aaPredicted RBP15.5■□□□□ 0.07
VPS39-210ENST00000568357 C15orf59Q2T9L4 293 aaPredicted RBP15.5■□□□□ 0.07
VPS39-210ENST00000568357 PLEKHG6Q3KR16 790 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 RABGAP1LQ5R372 815 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 PLA2G2CQ5R387 149 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 N4BP2L1Q5TBK1 243 aaPredicted RBP15.5■□□□□ 0.07
VPS39-210ENST00000568357 ACAD10Q6JQN1 1059 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 CXorf57Q6NSI4 855 aaKnown RBP15.5■□□□□ 0.07
VPS39-210ENST00000568357 KIAA1324Q6UXG2 1013 aaKnown RBP15.5■□□□□ 0.07
VPS39-210ENST00000568357 FAM131BQ86XD5 332 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 DEFB119Q8N690 84 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 OR52K2Q8NGK3 314 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 SPACA7Q96KW9 195 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 C1orf74Q96LT6 269 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 EDEM3Q9BZQ6 932 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 HAUS4Q9H6D7 363 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 PRSS16Q9NQE7 514 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 CYP8B1Q9UNU6 501 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 PCDHGA5Q9Y5G8 931 aa15.5■□□□□ 0.07
VPS39-210ENST00000568357 EML5Q05BV3 1969 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 SPEGQ15772 3267 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 A0A1B0GVM2 712 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 BCLAF3A2AJT9 711 aaKnown RBP15.49■□□□□ 0.07
VPS39-210ENST00000568357 TCAF2A6NFQ2 919 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 SIGLEC16A6NMB1 481 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 DRGXA6NNA5 263 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 GOLGA6L19H0YKK7 550 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 ZNF217O75362 1048 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 CALB1P05937 261 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 ZNF806P0C7X5 589 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 SKILP12757 684 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 SDC4P31431 198 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 MPLP40238 635 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 PTGER3P43115 390 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 DHPSP49366 369 aaPredicted RBP15.49■□□□□ 0.07
VPS39-210ENST00000568357 GSCP56915 257 aaPredicted RBP15.49■□□□□ 0.07
VPS39-210ENST00000568357 C1QBPQ07021 282 aaKnown RBP15.49■□□□□ 0.07
VPS39-210ENST00000568357 SF3A2Q15428 464 aaKnown RBP15.49■□□□□ 0.07
VPS39-210ENST00000568357 ASIC2Q16515 512 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 CDO1Q16878 200 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 ALFQ53S48 1182 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 FIGNQ5HY92 759 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 TTC39BQ5VTQ0 682 aaPredicted RBP15.49■□□□□ 0.07
VPS39-210ENST00000568357 SFMBT2Q5VUG0 894 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 WDR59Q6PJI9 974 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 LPCAT2Q7L5N7 544 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 ZNF571Q7Z3V5 609 aaPredicted RBP15.49■□□□□ 0.07
VPS39-210ENST00000568357 METTL3Q86U44 580 aaKnown RBP15.49■□□□□ 0.07
VPS39-210ENST00000568357 MCOLN2Q8IZK6 566 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 C3orf20Q8ND61 904 aa15.49■□□□□ 0.07
VPS39-210ENST00000568357 CENPIQ92674 756 aaPredicted RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms