RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PABPC3Q9H361 631 aaKnown RBP16.62■□□□□ 0.25
CLN3-229ENST00000567963 TM9SF3Q9HD45 589 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 FBXL12Q9NXK8 326 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 SLC12A6Q9UHW9 1150 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 SLCO3A1Q9UIG8 710 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 PCDHGC3Q9UN70 934 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 ANKRD6Q9Y2G4 727 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 PCDHGB2Q9Y5G2 931 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 GTPBP10A4D1E9 387 aaKnown RBP16.61■□□□□ 0.25
CLN3-229ENST00000567963 GLI1P08151 1106 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 FTH1P19P0C7X4 201 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 GRIA4P48058 902 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 TEAD4Q15561 434 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 KIF19Q2TAC6 998 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 PNPLA1Q8N8W4 532 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 ATP6V0D2Q8N8Y2 350 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 GANCQ8TET4 914 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 ADAMTS14Q8WXS8 1223 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 PPP1R13BQ96KQ4 1090 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 RPL10LQ96L21 214 aaKnown RBP16.61■□□□□ 0.25
CLN3-229ENST00000567963 PRMT1Q99873 361 aaKnown RBP16.61■□□□□ 0.25
CLN3-229ENST00000567963 ORAI3Q9BRQ5 295 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 SERGEFQ9UGK8 458 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 SNX11Q9Y5W9 270 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 ITIH6Q6UXX5 1313 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 CHD6Q8TD26 2715 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 EDDM13A0A1B0GTR0 161 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 F5H5T6 163 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 MID1O15344 667 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 IGHV4-34P06331 123 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 SLC2A3P11169 496 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 CDK17Q00537 523 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 SFSWAPQ12872 951 aaKnown RBP16.61■□□□□ 0.25
CLN3-229ENST00000567963 SLC12A1Q13621 1099 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 CST6Q15828 149 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 EFHC1Q5JVL4 640 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 KIAA0895LQ68EN5 471 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 SMYD5Q6GMV2 418 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 MMAAQ8IVH4 418 aaKnown RBP16.61■□□□□ 0.25
CLN3-229ENST00000567963 DEFB106AQ8N104 65 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 KNL1Q8NG31 2342 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 BAHD1Q8TBE0 780 aaPredicted RBP16.61■□□□□ 0.25
CLN3-229ENST00000567963 TMEM131Q92545 1883 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 PTPRN2Q92932 1015 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 SLC2A13Q96QE2 648 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 FAM129BQ96TA1 746 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 NEUROG2Q9H2A3 272 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 ASNSD1Q9NWL6 643 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 CEP83Q9Y592 693 aa16.61■□□□□ 0.25
CLN3-229ENST00000567963 A0A1W2PP55 124 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 FAM47DPA6NHR8 397 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 FLRT2O43155 660 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 ABCB4P21439 1286 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 CCR1P32246 355 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 GALCP54803 685 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 PTK2Q05397 1052 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 SUZ12Q15022 739 aaKnown RBP16.6■□□□□ 0.25
CLN3-229ENST00000567963 RNF219Q5W0B1 726 aaPredicted RBP16.6■□□□□ 0.25
CLN3-229ENST00000567963 SLCO6A1Q86UG4 719 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 PASD1Q8IV76 773 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 CCAR2Q8N163 923 aaKnown RBP16.6■□□□□ 0.25
CLN3-229ENST00000567963 MLKLQ8NB16 471 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 RHBDD1Q8TEB9 315 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 ZCCHC14Q8WYQ9 949 aaKnown RBP16.6■□□□□ 0.25
CLN3-229ENST00000567963 OMDQ99983 421 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 FAM204AQ9H8W3 233 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 DDIT4Q9NX09 232 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 ADAMTS1Q9UHI8 967 aa16.6■□□□□ 0.25
CLN3-229ENST00000567963 APOBEC2Q9Y235 224 aaKnown RBP16.6■□□□□ 0.25
CLN3-229ENST00000567963 IGF2RP11717 2491 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 SYNJ2BP-COX16A0A087WUM0 186 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 A0A1W2PPC4 97 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 HSF2BPO75031 334 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 GRAP2O75791 330 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 RNASEH2AO75792 299 aaKnown RBP16.59■□□□□ 0.25
CLN3-229ENST00000567963 SLC8A1P32418 973 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 MTIF2P46199 727 aaKnown RBP16.59■□□□□ 0.25
CLN3-229ENST00000567963 KCNT1Q5JUK3 1230 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 TTC39BQ5VTQ0 682 aaPredicted RBP16.59■□□□□ 0.25
CLN3-229ENST00000567963 NCEH1Q6PIU2 408 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 LAYNQ6UX15 382 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 CIR1Q86X95 450 aaPredicted RBP16.59■□□□□ 0.25
CLN3-229ENST00000567963 RNF34Q969K3 372 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 IGSF8Q969P0 613 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 NOX5Q96PH1 765 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 SIX2Q9NPC8 291 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 COX16Q9P0S2 106 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 AJAP1Q9UKB5 411 aaPredicted RBP16.59■□□□□ 0.25
CLN3-229ENST00000567963 FZD4Q9ULV1 537 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 LAMA5O15230 3695 aa16.59■□□□□ 0.25
CLN3-229ENST00000567963 A0A1B0GVM2 712 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 TCAF2A6NFQ2 919 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 SRRM3A6NNA2 597 aaPredicted RBP16.58■□□□□ 0.24
CLN3-229ENST00000567963 FOXN3O00409 490 aaPredicted RBP16.58■□□□□ 0.24
CLN3-229ENST00000567963 KCNK3O14649 394 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 PDGFRAP16234 1089 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 MZF1P28698 734 aaPredicted RBP16.58■□□□□ 0.24
CLN3-229ENST00000567963 CLCN1P35523 988 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 KRT9P35527 623 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 NNMTP40261 264 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms