RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 SLC12A8A0AV02 714 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CXorf49A8MYA2 514 aaPredicted RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 TCEA3O75764 348 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 KRT36O76013 467 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 IQCF3P0C7M6 154 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 ZNF132P52740 706 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 SLC39A12Q504Y0 691 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 GRTP1Q5TC63 336 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 PACS1Q6VY07 963 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 TTC7BQ86TV6 843 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 ZC3H15Q8WU90 426 aaKnown RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 MRPL1Q9BYD6 325 aaKnown RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 KCNK4Q9NYG8 393 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 ADAMTS5Q9UNA0 930 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CLUHO75153 1309 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 ADGRA2Q96PE1 1338 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 LTBP4Q8N2S1 1624 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 BCLAF3A2AJT9 711 aaKnown RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 MYBPHLA2RUH7 354 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 SLC15A5A6NIM6 579 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CRYBB1P53674 252 aaPredicted RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 USP4Q13107 963 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CRYMQ14894 314 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CTXN3Q4LDR2 81 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 SPANXN3Q5MJ09 141 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 FAM35AQ86V20 835 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 USP13Q92995 863 aaPredicted RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.84□□□□□ -0.515e-7■■■■■ 55
CDH1-210ENST00000566612 SNX27Q96L92 541 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CPNE1Q99829 537 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 ZNF395Q9H8N7 513 aaPredicted RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 TCF7L2Q9NQB0 619 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 FAM105AQ9NUU6 356 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 NSMCE4AQ9NXX6 385 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 SFMBT1Q9UHJ3 866 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 TRPV2Q9Y5S1 764 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 SMIM35A0A1B0GVV1 85 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CSH1P0DML2 217 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CSH2P0DML3 217 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 TFE3P19532 575 aaPredicted RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 CTBP1Q13363 440 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 MED21Q13503 144 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 ANKRD20A4Q4UJ75 823 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 WASHC2DQ5SRD0 308 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 FRA10AC1Q70Z53 315 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 STRADAQ7RTN6 431 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 C10orf107Q8IVU9 208 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 BANPQ8N9N5 519 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CATSPER2Q96P56 530 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 OMDQ99983 421 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 SYT17Q9BSW7 474 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 FAM8A1Q9UBU6 413 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 SUN2Q9UH99 717 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 AURKCQ9UQB9 309 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CASQ2O14958 399 aaPredicted RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 SPTLC1O15269 473 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 TSPAN3O60637 253 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 NOL3O60936 208 aaKnown RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 NDUFS3O75489 264 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 HSPA8P11142 646 aaKnown RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 TSHRP16473 764 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 TWF1Q12792 350 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 CNGA3Q16281 694 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.84□□□□□ -0.51
CDH1-210ENST00000566612 CTU1Q7Z7A3 348 aaKnown RBP11.84□□□□□ -0.51
CDH1-210ENST00000566612 CDC26Q8NHZ8 85 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 GPR152Q8TDT2 470 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 MYLPFQ96A32 169 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 GPAMQ9HCL2 828 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 ANLNQ9NQW6 1124 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 PNPOQ9NVS9 261 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 SOX13Q9UN79 622 aa11.84□□□□□ -0.51
CDH1-210ENST00000566612 MDM4O15151 490 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 SH3BP5O60239 455 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 CLDN10P78369 228 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 FLOT2Q14254 428 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 MARC1Q5VT66 337 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 SYPL2Q5VXT5 272 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 CALML6Q8TD86 181 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 AZIN2Q96A70 460 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 ZMAT2Q96NC0 199 aaKnown RBP11.83□□□□□ -0.52
CDH1-210ENST00000566612 EML4Q9HC35 981 aaKnown RBP11.83□□□□□ -0.52
CDH1-210ENST00000566612 TRPC7Q9HCX4 862 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 TRHDEQ9UKU6 1024 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 IGKV6D-21A0A0A0MT36 114 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 RNF103-CHMP3A0A140T963 221 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 PRR5-ARHGAP8B1AHC4 643 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 L1CAMP32004 1257 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 CLCNKBP51801 687 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 ARHGAP8P85298 464 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 IL1RL1Q01638 556 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 NBPF20Q3BBV1 942 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 MFSD3Q96ES6 412 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 TSPAN17Q96FV3 270 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 CHRAC1Q9NRG0 131 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 MPP6Q9NZW5 540 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 SUFUQ9UMX1 484 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 MFHAS1Q9Y4C4 1052 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 C10orf71Q711Q0 1435 aa11.83□□□□□ -0.52
CDH1-210ENST00000566612 ECM29Q5VYK3 1845 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms