RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 DBX2Q6ZNG2 339 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 CREBRFQ8IUR6 639 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 DHX40Q8IX18 779 aaKnown RBP19.36■□□□□ 0.69
CLN3-218ENST00000565688 CDC6Q99741 560 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 MTG2Q9H4K7 406 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 ASNSD1Q9NWL6 643 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 FBXL12Q9NXK8 326 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 XPO7Q9UIA9 1087 aaKnown RBP19.36■□□□□ 0.69
CLN3-218ENST00000565688 ANKRD6Q9Y2G4 727 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 NUMA1Q14980 2115 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 ANKRD11Q6UB99 2663 aaPredicted RBP19.35■□□□□ 0.69
CLN3-218ENST00000565688 ITIH6Q6UXX5 1313 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 KCNU1A8MYU2 1149 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 ABCB4P21439 1286 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 OXCT1P55809 520 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 SNX16P57768 344 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 CST6Q15828 149 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 ARHGAP44Q17R89 818 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 EXOC3L4Q17RC7 722 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 EFHC1Q5JVL4 640 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 C9orf64Q5T6V5 341 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 KIAA0895LQ68EN5 471 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 GJB7Q6PEY0 223 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 MMS22LQ6ZRQ5 1243 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 SHC3Q92529 594 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 NOX5Q96PH1 765 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 FAM204AQ9H8W3 233 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 ACP6Q9NPH0 428 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 FZD4Q9ULV1 537 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 SLCO1B1Q9Y6L6 691 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 PKD1L2Q7Z442 2459 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 WDFY3Q8IZQ1 3526 aa19.35■□□□□ 0.69
CLN3-218ENST00000565688 LRRC72A6NJI9 287 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 BECN2A8MW95 431 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 SLC9A1P19634 815 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 CCR1P32246 355 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 NNMTP40261 264 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 UBE2HP62256 183 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 SULT2A1Q06520 285 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 EIF4EBP2Q13542 120 aaPredicted RBP19.34■□□□□ 0.69
CLN3-218ENST00000565688 RABGAP1LQ5R372 815 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 ADAT2Q7Z6V5 191 aaKnown RBP19.34■□□□□ 0.69
CLN3-218ENST00000565688 BAHD1Q8TBE0 780 aaPredicted RBP19.34■□□□□ 0.69
CLN3-218ENST00000565688 RHBDD1Q8TEB9 315 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 IGSF8Q969P0 613 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 PPP1R13BQ96KQ4 1090 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 SLC2A13Q96QE2 648 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 PPP1R9BQ96SB3 815 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 OMDQ99983 421 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 DDIT4Q9NX09 232 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 ADAMTS1Q9UHI8 967 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 PCDHGC3Q9UN70 934 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 SNX11Q9Y5W9 270 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 FREM2Q5SZK8 3169 aa19.34■□□□□ 0.69
CLN3-218ENST00000565688 KNL1Q8NG31 2342 aa19.33■□□□□ 0.69
CLN3-218ENST00000565688 SRRM3A6NNA2 597 aaPredicted RBP19.33■□□□□ 0.68
CLN3-218ENST00000565688 TTC34A8MYJ7 566 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 MID1O15344 667 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 DFNA5O60443 496 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 HSF2BPO75031 334 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 ADH1BP00325 375 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 IGHV4-34P06331 123 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 CTSOP43234 321 aaPredicted RBP19.33■□□□□ 0.68
CLN3-218ENST00000565688 GALCP54803 685 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 RACK1P63244 317 aaKnown RBP19.33■□□□□ 0.68
CLN3-218ENST00000565688 PTK2Q05397 1052 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 TAF5Q15542 800 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 CAMK4Q16566 473 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 MMAAQ8IVH4 418 aaKnown RBP19.33■□□□□ 0.68
CLN3-218ENST00000565688 APCDD1Q8J025 514 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 MLKLQ8NB16 471 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 OR2T34Q8NGX1 318 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 RNF34Q969K3 372 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 SKA1Q96BD8 255 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 CPXM1Q96SM3 734 aa19.33■□□□□ 0.68
CLN3-218ENST00000565688 PRMT1Q99873 361 aaKnown RBP19.33■□□□□ 0.68
CLN3-218ENST00000565688 TPX2Q9ULW0 747 aaKnown RBP19.33■□□□□ 0.68
CLN3-218ENST00000565688 A0A1B0GVM2 712 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 A0A1W2PP55 124 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 TCAF2A6NFQ2 919 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 FAM47DPA6NHR8 397 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 RNASEH2AO75792 299 aaKnown RBP19.32■□□□□ 0.68
CLN3-218ENST00000565688 PON1P27169 355 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 SLC8A1P32418 973 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 MTIF2P46199 727 aaKnown RBP19.32■□□□□ 0.68
CLN3-218ENST00000565688 CCT8P50990 548 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 C21orf59P57076 290 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 PITX1P78337 314 aaPredicted RBP19.32■□□□□ 0.68
CLN3-218ENST00000565688 ELAVL3Q14576 367 aaKnown RBP19.32■□□□□ 0.68
CLN3-218ENST00000565688 NCEH1Q6PIU2 408 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 LRSAM1Q6UWE0 723 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 C11orf57Q6ZUT1 292 aaPredicted RBP19.32■□□□□ 0.68
CLN3-218ENST00000565688 SLCO6A1Q86UG4 719 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 IRF2BP1Q8IU81 584 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 DEFB106AQ8N104 65 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 CCAR2Q8N163 923 aaKnown RBP19.32■□□□□ 0.68
CLN3-218ENST00000565688 WDTC1Q8N5D0 677 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 PNPLA1Q8N8W4 532 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 RPL10LQ96L21 214 aaKnown RBP19.32■□□□□ 0.68
CLN3-218ENST00000565688 FAM129BQ96TA1 746 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms