RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CTSOP43234 321 aaPredicted RBP17.71■□□□□ 0.42
CLN3-216ENST00000565316 SFSWAPQ12872 951 aaKnown RBP17.71■□□□□ 0.42
CLN3-216ENST00000565316 PDCLQ13371 301 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 SUZ12Q15022 739 aaKnown RBP17.71■□□□□ 0.42
CLN3-216ENST00000565316 CST6Q15828 149 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 KIAA0895LQ68EN5 471 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 TRIM65Q6PJ69 517 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 LGI2Q8N0V4 545 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 IGSF8Q969P0 613 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 FAM129BQ96TA1 746 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 CDC6Q99741 560 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 PRMT1Q99873 361 aaKnown RBP17.71■□□□□ 0.42
CLN3-216ENST00000565316 ACP6Q9NPH0 428 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 TOR4AQ9NXH8 423 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 FBXL12Q9NXK8 326 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 SERGEFQ9UGK8 458 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 RALYQ9UKM9 306 aaKnown RBP17.71■□□□□ 0.42
CLN3-216ENST00000565316 EDDM13A0A1B0GTR0 161 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 BECN2A8MW95 431 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 TTC34A8MYJ7 566 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 KCNU1A8MYU2 1149 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 TAF4O00268 1085 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 THAP12O43422 761 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 MOCS3O95396 460 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 CTSKP43235 329 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 GALCP54803 685 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 PITX1P78337 314 aaPredicted RBP17.7■□□□□ 0.42
CLN3-216ENST00000565316 ECT2LQ008S8 904 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 TAF5Q15542 800 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 KCNT1Q5JUK3 1230 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 RAP1GAP2Q684P5 730 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 CHSY1Q86X52 802 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 DHX40Q8IX18 779 aaKnown RBP17.7■□□□□ 0.42
CLN3-216ENST00000565316 APCDD1Q8J025 514 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 WDTC1Q8N5D0 677 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 RHBDD1Q8TEB9 315 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 CRACR2AQ9BSW2 395 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.7■□□□□ 0.42
CLN3-216ENST00000565316 ASNSD1Q9NWL6 643 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 TJP2Q9UDY2 1190 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 SLCO3A1Q9UIG8 710 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 RWDD2AQ9UIY3 292 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 FZD4Q9ULV1 537 aa17.7■□□□□ 0.42
CLN3-216ENST00000565316 MID1O15344 667 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 PCDHGA12O60330 932 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 GLI1P08151 1106 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 SLC9A1P19634 815 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 PLK1P53350 603 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 RACK1P63244 317 aaKnown RBP17.69■□□□□ 0.42
CLN3-216ENST00000565316 SLC12A1Q13621 1099 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 GJB7Q6PEY0 223 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 GANCQ8TET4 914 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 SHC3Q92529 594 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 SLC2A13Q96QE2 648 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 NEUROG2Q9H2A3 272 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 BTBD3Q9Y2F9 522 aa17.69■□□□□ 0.42
CLN3-216ENST00000565316 ATRXP46100 2492 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 A0A1W2PP55 124 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 A0A1W2PPC4 97 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 GTPBP10A4D1E9 387 aaKnown RBP17.68■□□□□ 0.42
CLN3-216ENST00000565316 H0Y8X5 98 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 VILLO15195 856 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 DFNA5O60443 496 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 ATXN1LP0C7T5 689 aaKnown RBP17.68■□□□□ 0.42
CLN3-216ENST00000565316 SLC2A3P11169 496 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 SLC8A1P32418 973 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 VASPP50552 380 aaPredicted RBP17.68■□□□□ 0.42
CLN3-216ENST00000565316 SCAPQ12770 1279 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 NCEH1Q6PIU2 408 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 LAYNQ6UX15 382 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 GBP6Q6ZN66 633 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 PROSER1Q86XN7 944 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 IRF2BP1Q8IU81 584 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 MMAAQ8IVH4 418 aaKnown RBP17.68■□□□□ 0.42
CLN3-216ENST00000565316 ATP6V0D2Q8N8Y2 350 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 OR2T34Q8NGX1 318 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 PTPRN2Q92932 1015 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 CPXM1Q96SM3 734 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 EBF2Q9HAK2 575 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 KIAA1468Q9P260 1216 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 APEX2Q9UBZ4 518 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 SLC12A6Q9UHW9 1150 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 PCDHGC3Q9UN70 934 aa17.68■□□□□ 0.42
CLN3-216ENST00000565316 CACNA1GO43497 2377 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 LRRC72A6NJI9 287 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 F5H5T6 163 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 RNASEH2AO75792 299 aaKnown RBP17.67■□□□□ 0.42
CLN3-216ENST00000565316 ADH1BP00325 375 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 GRK6P43250 576 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 CCT8P50990 548 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 CCR5P51681 352 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 CDK17Q00537 523 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 APBA1Q02410 837 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 SULT2A1Q06520 285 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 KCNJ12Q14500 433 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 TTC39BQ5VTQ0 682 aaPredicted RBP17.67■□□□□ 0.42
CLN3-216ENST00000565316 TMPRSS7Q7RTY8 843 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 DEFB106AQ8N104 65 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 CCAR2Q8N163 923 aaKnown RBP17.67■□□□□ 0.42
CLN3-216ENST00000565316 AADATQ8N5Z0 425 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms