RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SCML1Q9UN30 329 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 CEP192Q8TEP8 1941 aa17.46■□□□□ 0.39
CLN3-211ENST00000564091 TRABD2BA6NFA1 517 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 CAPN9O14815 690 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 VILLO15195 856 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 P4HA2O15460 535 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 WNT1P04628 370 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 KRT5P13647 590 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 SLC8A1P32418 973 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 GCNT1Q02742 428 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 CYP4F3Q08477 520 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 GATAD2AQ86YP4 633 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 APCDD1Q8J025 514 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 HNRNPLLQ8WVV9 542 aaKnown RBP17.45■□□□□ 0.38
CLN3-211ENST00000564091 NELFBQ8WX92 580 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 RPL10LQ96L21 214 aaKnown RBP17.45■□□□□ 0.38
CLN3-211ENST00000564091 FAM129BQ96TA1 746 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 OMDQ99983 421 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 HOOK1Q9UJC3 728 aaKnown RBP17.45■□□□□ 0.38
CLN3-211ENST00000564091 CEP83Q9Y592 693 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 ACACAQ13085 2346 aa17.45■□□□□ 0.38
CLN3-211ENST00000564091 CKAP5Q14008 2032 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 A0A1B0GTQ1 180 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 TARSL2A2RTX5 802 aaKnown RBP17.44■□□□□ 0.38
CLN3-211ENST00000564091 PPP1R3GB7ZBB8 358 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 WNT9AO14904 365 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 PAPSS1O43252 624 aaPredicted RBP17.44■□□□□ 0.38
CLN3-211ENST00000564091 SRPRAP08240 638 aaKnown RBP17.44■□□□□ 0.38
CLN3-211ENST00000564091 TACR2P21452 398 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 BMP6P22004 513 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 PSMD8P48556 350 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 STX17P56962 302 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 ECT2LQ008S8 904 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 KCNH2Q12809 1159 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 NNTQ13423 1086 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 KCNJ12Q14500 433 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 ARID5BQ14865 1188 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 DHRS13Q6UX07 377 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 PDZD3Q86UT5 571 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 CHSY1Q86X52 802 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 STK40Q8N2I9 435 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 AADATQ8N5Z0 425 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 KDM1BQ8NB78 822 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 INTS2Q9H0H0 1204 aaKnown RBP17.44■□□□□ 0.38
CLN3-211ENST00000564091 ACP6Q9NPH0 428 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 TJP2Q9UDY2 1190 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 CYTH4Q9UIA0 394 aa17.44■□□□□ 0.38
CLN3-211ENST00000564091 EDDM13A0A1B0GTR0 161 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 LRRC72A6NJI9 287 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 E5RJQ4 531 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 SART1O43290 800 aaKnown RBP17.43■□□□□ 0.38
CLN3-211ENST00000564091 LETM1O95202 739 aaPredicted RBP17.43■□□□□ 0.38
CLN3-211ENST00000564091 MOCS3O95396 460 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 APOEP02649 317 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 ACADSBP45954 432 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 STK19P49842 368 aaPredicted RBP17.43■□□□□ 0.38
CLN3-211ENST00000564091 PITX1P78337 314 aaPredicted RBP17.43■□□□□ 0.38
CLN3-211ENST00000564091 SFSWAPQ12872 951 aaKnown RBP17.43■□□□□ 0.38
CLN3-211ENST00000564091 CAMK2BQ13554 666 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 TAF5Q15542 800 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 RNF219Q5W0B1 726 aaPredicted RBP17.43■□□□□ 0.38
CLN3-211ENST00000564091 TRIM59Q8IWR1 403 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 GALNT15Q8N3T1 639 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 OR2T34Q8NGX1 318 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 PTPRN2Q92932 1015 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 ELF4Q99607 663 aaPredicted RBP17.43■□□□□ 0.38
CLN3-211ENST00000564091 SLC4A5Q9BY07 1137 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 UBE2TQ9NPD8 197 aaPredicted RBP17.43■□□□□ 0.38
CLN3-211ENST00000564091 AASDHPPTQ9NRN7 309 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 FTSJ1Q9UET6 329 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 ADAMTS1Q9UHI8 967 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 CNTN6Q9UQ52 1028 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 CTNND2Q9UQB3 1225 aa17.43■□□□□ 0.38
CLN3-211ENST00000564091 CBX4O00257 560 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 TRUB2O95900 331 aaKnown RBP17.42■□□□□ 0.38
CLN3-211ENST00000564091 AFPP02771 609 aaKnown RBP17.42■□□□□ 0.38
CLN3-211ENST00000564091 VAV1P15498 845 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 GOT1P17174 413 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 NUCB2P80303 420 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 SHBQ15464 509 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 SMAD1Q15797 465 aaKnown RBP17.42■□□□□ 0.38
CLN3-211ENST00000564091 BEND5Q7L4P6 421 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 TMEM110Q86TL2 294 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 CIR1Q86X95 450 aaPredicted RBP17.42■□□□□ 0.38
CLN3-211ENST00000564091 OR14C36Q8NHC7 312 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 STK32AQ8WU08 396 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 FZD4Q9ULV1 537 aa17.42■□□□□ 0.38
CLN3-211ENST00000564091 A0A1W2PR77 199 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 C10orf142B7Z368 130 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 BIN1O00499 593 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 DFNA5O60443 496 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 IL1BP01584 269 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 IGLV3-25P01717 112 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 PDGFRAP16234 1089 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 MZF1P28698 734 aaPredicted RBP17.41■□□□□ 0.38
CLN3-211ENST00000564091 CD38P28907 300 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 PPP1R2P41236 205 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 METAP1P53582 386 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 ADPRHP54922 357 aa17.41■□□□□ 0.38
CLN3-211ENST00000564091 CLDN6P56747 220 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms