RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 SNAP47Q5SQN1 464 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 IQSEC1Q6DN90 963 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 SLFN12LQ6IEE8 588 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 NECAB2Q7Z6G3 386 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 RDH11Q8TC12 318 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 AKAP1Q92667 903 aaKnown RBP eCLIP6.38□□□□□ -1.39
CLK3-212ENST00000563418 MYLPFQ96A32 169 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 HMGXB4Q9UGU5 601 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 IRS4O14654 1257 aaPredicted RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 CD58P19256 250 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 GUCY1A2P33402 732 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 RPL14P50914 215 aaKnown RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 MYBPC1Q00872 1141 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 MVKQ03426 396 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 DLG1Q12959 904 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 CLCA4Q14CN2 919 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 FAM83EQ2M2I3 478 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 BHLHB9Q6PI77 547 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 SLC30A10Q6XR72 485 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 TREML1Q86YW5 311 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 CENPLQ8N0S6 344 aaPredicted RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 MAGEE2Q8TD90 523 aaPredicted RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 CHCHD6Q9BRQ6 235 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 GON7Q9BXV9 100 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 NMUR2Q9GZQ4 415 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 ZDHHC7Q9NXF8 308 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 CFL2Q9Y281 166 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 USP6P35125 1406 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 NR3C2P08235 984 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 CYP19A1P11511 503 aaPredicted RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 AMPD1P23109 780 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 ACTR2P61160 394 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 TTC29Q8NA56 475 aaPredicted RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 GAB3Q8WWW8 586 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 ASB12Q8WXK4 309 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 CENPNQ96H22 339 aaPredicted RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 C11orf70Q9BRQ4 267 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 ADPGKQ9BRR6 497 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 PUS7LQ9H0K6 701 aaKnown RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 RGS17Q9UGC6 210 aaPredicted RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 EDARQ9UNE0 448 aa6.38□□□□□ -1.39
CLK3-212ENST00000563418 REXO2Q9Y3B8 237 aaKnown RBP6.38□□□□□ -1.39
CLK3-212ENST00000563418 ABCA6Q8N139 1617 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 HSMCR30P0CW71 290 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PEPDP12955 493 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 IFI30P13284 250 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PON1P27169 355 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 RPL22P35268 128 aaKnown RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 PSME3P61289 254 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 C11orf88Q6PI97 169 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 TBC1D10CQ8IV04 446 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 CCNYQ8ND76 341 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ZSWIM2Q8NEG5 633 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ANGPTL6Q8NI99 470 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 HSPBP1Q9NZL4 362 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 SLC13A4Q9UKG4 626 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 NDUFAF1Q9Y375 327 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PPME1Q9Y570 386 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 SNX9Q9Y5X1 595 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 TSPAN19P0C672 248 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 TCF4P15884 667 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 MAB21L1Q13394 359 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ILDR1Q86SU0 546 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 SLC22A16Q86VW1 577 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 BPIFB6Q8NFQ5 453 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PSKH2Q96QS6 385 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 MAP2P11137 1827 aaKnown RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 AURKAO14965 403 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 SDC2P34741 201 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PHKA1P46020 1223 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 NEK3P51956 506 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 FASTKQ14296 549 aaKnown RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 ZNF571Q7Z3V5 609 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 SH3RF1Q7Z6J0 888 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 EMC1Q8N766 993 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 CNTD1Q8N815 330 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 C12orf50Q8NA57 414 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 THRBP10828 461 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 RXRBP28702 533 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 GNA15P30679 374 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 GDI2P50395 445 aaKnown RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 Q6ZNX1 250 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 DEPDC4Q8N2C3 294 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ZFP28Q8NHY6 868 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ETNPPLQ8TBG4 499 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 EYA3Q99504 573 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 RAB6BQ9NRW1 208 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 CUEDC1Q9NWM3 386 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 SLC7A8Q9UHI5 535 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 MAB21L2Q9Y586 359 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PTGES3LE9PB15 166 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 MRASO14807 208 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 KCNN4O15554 427 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PDE8AO60658 829 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 HARS2P49590 506 aaKnown RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 FAM69CQ0P6D2 419 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 CA9Q16790 459 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 DGLUCYQ7Z3D6 616 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PROSER1Q86XN7 944 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms