RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 CRACR2AQ9BSW2 395 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 TRIM62Q9BVG3 475 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 NEUROG2Q9H2A3 272 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 PABPC3Q9H361 631 aaKnown RBP16.29■□□□□ 0.2
CLK3-211ENST00000563297 TJP2Q9UDY2 1190 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 SLCO3A1Q9UIG8 710 aa16.29■□□□□ 0.2
CLK3-211ENST00000563297 CACNA1GO43497 2377 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 TARSL2A2RTX5 802 aaKnown RBP16.28■□□□□ 0.2
CLK3-211ENST00000563297 BECN2A8MW95 431 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 MID1O15344 667 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 RNASEH1O60930 286 aaKnown RBP16.28■□□□□ 0.2
CLK3-211ENST00000563297 APOEP02649 317 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 IGHV4-34P06331 123 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 TACR2P21452 398 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 GNA15P30679 374 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 GRIA4P48058 902 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 ECT2LQ008S8 904 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 SUZ12Q15022 739 aaKnown RBP16.28■□□□□ 0.2
CLK3-211ENST00000563297 CST6Q15828 149 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 KCNT1Q5JUK3 1230 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 KIAA0895LQ68EN5 471 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 LAYNQ6UX15 382 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 CCNI2Q6ZMN8 369 aaPredicted RBP16.28■□□□□ 0.2
CLK3-211ENST00000563297 GANCQ8TET4 914 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.28■□□□□ 0.2
CLK3-211ENST00000563297 TOR4AQ9NXH8 423 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 SERGEFQ9UGK8 458 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 BTBD3Q9Y2F9 522 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 PKD1L2Q7Z442 2459 aa16.28■□□□□ 0.2
CLK3-211ENST00000563297 FAM47DPA6NHR8 397 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 KCNU1A8MYU2 1149 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 FLRT2O43155 660 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 MOCS3O95396 460 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 ATXN1LP0C7T5 689 aaKnown RBP16.27■□□□□ 0.2
CLK3-211ENST00000563297 SLC8A1P32418 973 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 APBA1Q02410 837 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 ARHGAP44Q17R89 818 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 NCEH1Q6PIU2 408 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 TRIM65Q6PJ69 517 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 CHSY1Q86X52 802 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 MMAAQ8IVH4 418 aaKnown RBP16.27■□□□□ 0.2
CLK3-211ENST00000563297 ATP6V0D2Q8N8Y2 350 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 PTPRN2Q92932 1015 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 IGSF8Q969P0 613 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 RPL10LQ96L21 214 aaKnown RBP16.27■□□□□ 0.2
CLK3-211ENST00000563297 CDC6Q99741 560 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 PRMT1Q99873 361 aaKnown RBP16.27■□□□□ 0.2
CLK3-211ENST00000563297 EBF2Q9HAK2 575 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 KIAA1468Q9P260 1216 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 RWDD2AQ9UIY3 292 aa16.27■□□□□ 0.2
CLK3-211ENST00000563297 ITIH6Q6UXX5 1313 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 EDDM13A0A1B0GTR0 161 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 A0A1W2PP55 124 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 A0A1W2PPC4 97 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 C10orf142B7Z368 130 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 H0Y8X5 98 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 USP8P40818 1118 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 CTSKP43235 329 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 RACK1P63244 317 aaKnown RBP16.26■□□□□ 0.19
CLK3-211ENST00000563297 SCAPQ12770 1279 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 SFSWAPQ12872 951 aaKnown RBP16.26■□□□□ 0.19
CLK3-211ENST00000563297 PDCLQ13371 301 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 GBP6Q6ZN66 633 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 IRF2BP1Q8IU81 584 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 CREBRFQ8IUR6 639 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 DEFB106AQ8N104 65 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 FAM81BQ96LP2 452 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 OMDQ99983 421 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 ADAMTS1Q9UHI8 967 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 SLC12A6Q9UHW9 1150 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 ZFYVE26Q68DK2 2539 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 PLXNA2O75051 1894 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 DSPP15924 2871 aaKnown RBP16.26■□□□□ 0.19
CLK3-211ENST00000563297 FREM2Q5SZK8 3169 aa16.26■□□□□ 0.19
CLK3-211ENST00000563297 ANKRD11Q6UB99 2663 aaPredicted RBP16.25■□□□□ 0.19
CLK3-211ENST00000563297 F5H5T6 163 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 VILLO15195 856 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 PCDHGA12O60330 932 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 RNASEH2AO75792 299 aaKnown RBP16.25■□□□□ 0.19
CLK3-211ENST00000563297 DKK1O94907 266 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 GLI1P08151 1106 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 MZF1P28698 734 aaPredicted RBP16.25■□□□□ 0.19
CLK3-211ENST00000563297 STK19P49842 368 aaPredicted RBP16.25■□□□□ 0.19
CLK3-211ENST00000563297 PLK1P53350 603 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 CDK17Q00537 523 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 SLC12A1Q13621 1099 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 KCNJ12Q14500 433 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 EFHC1Q5JVL4 640 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 ADAT2Q7Z6V5 191 aaKnown RBP16.25■□□□□ 0.19
CLK3-211ENST00000563297 PROSER1Q86XN7 944 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 CCAR2Q8N163 923 aaKnown RBP16.25■□□□□ 0.19
CLK3-211ENST00000563297 STK40Q8N2I9 435 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 AADATQ8N5Z0 425 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 OR2T34Q8NGX1 318 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 SHC3Q92529 594 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 PPP1R13BQ96KQ4 1090 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 SLC2A13Q96QE2 648 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 CPXM1Q96SM3 734 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 APEX2Q9UBZ4 518 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 FZD4Q9ULV1 537 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms