RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 NOP9Q86U38 636 aaKnown RBP16.49■□□□□ 0.23
LMX1B-204ENST00000561065 ZNF677Q86XU0 584 aa16.49■□□□□ 0.23
LMX1B-204ENST00000561065 CCDC117Q8IWD4 279 aaPredicted RBP16.49■□□□□ 0.23
LMX1B-204ENST00000561065 APCDD1Q8J025 514 aa16.49■□□□□ 0.23
LMX1B-204ENST00000561065 ZCCHC9Q8N567 271 aaKnown RBP16.49■□□□□ 0.23
LMX1B-204ENST00000561065 MINDY1Q8N5J2 469 aa16.49■□□□□ 0.23
LMX1B-204ENST00000561065 OR52K2Q8NGK3 314 aa16.49■□□□□ 0.23
LMX1B-204ENST00000561065 FOXJ1Q92949 421 aa16.49■□□□□ 0.23
LMX1B-204ENST00000561065 ANLNQ9NQW6 1124 aa16.49■□□□□ 0.23
LMX1B-204ENST00000561065 DOCK4Q8N1I0 1966 aa16.49■□□□□ 0.23
LMX1B-204ENST00000561065 USP24Q9UPU5 2620 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 F5H5T6 163 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 F8VZ95 297 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 ARHGAP33O14559 1287 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 EPHB6O15197 1021 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 SIN3BO75182 1162 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 GJB3O75712 270 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 SLC2A3P11169 496 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 ACADMP11310 421 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 CSRP1P21291 193 aaKnown RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 STK19P49842 368 aaPredicted RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 ZNF165P49910 485 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 SLC6A3Q01959 620 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 GFPT1Q06210 699 aaPredicted RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 GRIK2Q13002 908 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 SEMA3BQ13214 749 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 SYCP1Q15431 976 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 HNRNPA1L2Q32P51 320 aaKnown RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 PLEKHG6Q3KR16 790 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 ANO6Q4KMQ2 910 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 C2CD6Q53TS8 623 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 TAF3Q5VWG9 929 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 CXorf57Q6NSI4 855 aaKnown RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 TRNP1Q6NT89 227 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 PIP4P1Q86T03 277 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 CCAR2Q8N163 923 aaKnown RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 ATP6V0D2Q8N8Y2 350 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 ZNF397Q8NF99 534 aaPredicted RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 CADM4Q8NFZ8 388 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 C1orf216Q8TAB5 229 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 EPS8L1Q8TE68 723 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 IGSF8Q969P0 613 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 RSPH9Q9H1X1 276 aaPredicted RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 C6orf106Q9H6K1 298 aaPredicted RBP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.48■□□□□ 0.23
LMX1B-204ENST00000561065 ERVW-1Q9UQF0 538 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 ITIH6Q6UXX5 1313 aa16.48■□□□□ 0.23
LMX1B-204ENST00000561065 LGALS16A8MUM7 142 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 METTL12A8MUP2 240 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 TTC34A8MYJ7 566 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 H0Y626 953 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 ASLP04424 464 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 MZF1P28698 734 aaPredicted RBP16.47■□□□□ 0.23
LMX1B-204ENST00000561065 OXTRP30559 389 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 CCR1P32246 355 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 STAT1P42224 750 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 BNC1Q01954 994 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 NME3Q13232 169 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 WDR45BQ5MNZ6 344 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 SYCP2LQ5T4T6 812 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 FBXL22Q6P050 247 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 RABEPKQ7Z6M1 372 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 C14orf80Q86SX3 495 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 DHX40Q8IX18 779 aaKnown RBP16.47■□□□□ 0.23
LMX1B-204ENST00000561065 NPY6RQ99463 290 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 NUP58Q9BVL2 599 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 FBRSQ9HAH7 460 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 PIGVQ9NUD9 493 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 RRN3Q9NYV6 651 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 SERGEFQ9UGK8 458 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 SUSD2Q9UGT4 822 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 WASF3Q9UPY6 502 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 HS3ST4Q9Y661 456 aa16.47■□□□□ 0.23
LMX1B-204ENST00000561065 A0A1B0GVM2 712 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 TCAF2A6NFQ2 919 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 LSM8O95777 96 aaKnown RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 TOP3BO95985 862 aaKnown RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 MMEP08473 750 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 PDGFRAP16234 1089 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 NOS2P35228 1153 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 GABRB2P47870 512 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 POLR2FP61218 127 aaKnown RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 SHC2P98077 582 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 ARID5BQ14865 1188 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 ARTNQ5T4W7 220 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 C9orf64Q5T6V5 341 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 ZNF776Q68DI1 518 aaPredicted RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 XYLT1Q86Y38 959 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 AOPEPQ8N6M6 819 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 SLC20A1Q8WUM9 679 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 RPL10LQ96L21 214 aaKnown RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 MIR1-1HGQ9H1L0 117 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 FAM207AQ9NSI2 230 aaPredicted RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 DNAAF2Q9NVR5 837 aaKnown RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 KIAA1522Q9P206 1035 aaPredicted RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 EIF2B4Q9UI10 523 aaKnown RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 SLCO3A1Q9UIG8 710 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 NOCTQ9UK39 431 aaKnown RBP16.46■□□□□ 0.23
LMX1B-204ENST00000561065 ANGPTL2Q9UKU9 493 aa16.46■□□□□ 0.23
LMX1B-204ENST00000561065 VANGL2Q9ULK5 521 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms