RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PRMT1Q99873 361 aaKnown RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 ZDHHC5Q9C0B5 715 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 NUP62CLQ9H1M0 184 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 NEUROG2Q9H2A3 272 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 PDCL3Q9H2J4 239 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 PABPC3Q9H361 631 aaKnown RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 GAREM1Q9H706 876 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 SYNCQ9H7C4 482 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 FBRSQ9HAH7 460 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 SAMSN1Q9NSI8 373 aaKnown RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 FBXL12Q9NXK8 326 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 NCKAP1Q9Y2A7 1128 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.56□□□□□ -0.72
LDLR-214ENST00000560628 PCDHB9Q9Y5E1 797 aa10.56□□□□□ -0.72
LDLR-214ENST00000560628 CKAP5Q14008 2032 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 CACNA1BQ00975 2339 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 A0A1W2PP55 124 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 M0QYT0 321 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 RNASEH1O60930 286 aaKnown RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 HSF2BPO75031 334 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 PROS1P07225 676 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 SRPRAP08240 638 aaKnown RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 SLC2A3P11169 496 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 VAV1P15498 845 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 ERCC5P28715 1186 aaPredicted RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 SLC8A1P32418 973 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 GGCXP38435 758 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 MATKP42679 507 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 IRAK1P51617 712 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 SLC6A3Q01959 620 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 CENPCQ03188 943 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 SLC14A1Q13336 389 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 AUHQ13825 339 aaKnown RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 KCNJ12Q14500 433 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 TRIP6Q15654 476 aaKnown RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 CST6Q15828 149 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 KIF19Q2TAC6 998 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 HLA-BQ31612 363 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 TTC31Q49AM3 519 aaPredicted RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 PTPN20Q4JDL3 420 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 KLHDC7AQ5VTJ3 777 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 TAF3Q5VWG9 929 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 RNF219Q5W0B1 726 aaPredicted RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 OLFML1Q6UWY5 402 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 LAYNQ6UX15 382 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 C14orf80Q86SX3 495 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 NAXDQ8IW45 347 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 CCAR2Q8N163 923 aaKnown RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 STK40Q8N2I9 435 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 CHCHD4Q8N4Q1 142 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 SETD7Q8WTS6 366 aaKnown RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 IGSF8Q969P0 613 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 RPRD1AQ96P16 312 aaPredicted RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 FAM129BQ96TA1 746 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 SIK2Q9H0K1 926 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 PCED1AQ9H1Q7 454 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 SGK2Q9HBY8 427 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 TM9SF3Q9HD45 589 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 ASNSD1Q9NWL6 643 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 SERGEFQ9UGK8 458 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 VANGL2Q9ULK5 521 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 FNDC3AQ9Y2H6 1198 aaKnown RBP10.55□□□□□ -0.72
LDLR-214ENST00000560628 SNX11Q9Y5W9 270 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 SNX10Q9Y5X0 201 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 FHOD1Q9Y613 1164 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 PCDH15Q96QU1 1955 aa10.55□□□□□ -0.72
LDLR-214ENST00000560628 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.54□□□□□ -0.72
LDLR-214ENST00000560628 EDDM13A0A1B0GTR0 161 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 TARSL2A2RTX5 802 aaKnown RBP10.54□□□□□ -0.72
LDLR-214ENST00000560628 PAGE1O75459 146 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 RNASEH2AO75792 299 aaKnown RBP10.54□□□□□ -0.72
LDLR-214ENST00000560628 C7P10643 843 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 TFE3P19532 575 aaPredicted RBP10.54□□□□□ -0.72
LDLR-214ENST00000560628 CD27P26842 260 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 NOS2P35228 1153 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 NNMTP40261 264 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 PSMD8P48556 350 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 AFF3P51826 1226 aaKnown RBP10.54□□□□□ -0.72
LDLR-214ENST00000560628 GALCP54803 685 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 SNX16P57768 344 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 BPIFB4P59827 614 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 ZNF177Q13360 481 aaPredicted RBP10.54□□□□□ -0.72
LDLR-214ENST00000560628 ACCSLQ4AC99 568 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 C2CD6Q53TS8 623 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 KCNT1Q5JUK3 1230 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 RABGAP1LQ5R372 815 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 KIAA0895LQ68EN5 471 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 NCEH1Q6PIU2 408 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 UNQ6494/PRO21346Q6UXR6 183 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 SLC26A9Q7LBE3 791 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 PNPLA1Q8N8W4 532 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 KDM1BQ8NB78 822 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 TMEM35BQ8NCS4 154 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 OR52K2Q8NGK3 314 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 PTPRN2Q92932 1015 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 OMDQ99983 421 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 ADAM33Q9BZ11 813 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 TM7SF3Q9NS93 570 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 TAB2Q9NYJ8 693 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 DACH1Q9UI36 760 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms