RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 PNRC2Q9NPJ4 139 aaKnown RBP3.09□□□□□ -1.91
SPG11-222ENST00000560435 E2F8A0AVK6 867 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 ITGB8P26012 769 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 GSTM5P46439 218 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 CRIP2P52943 208 aaPredicted RBP3.08□□□□□ -1.92
SPG11-222ENST00000560435 SLC37A1P57057 533 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 ZNF367Q7RTV3 350 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 DCUN1D3Q8IWE4 304 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 TPH2Q8IWU9 490 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 EXD3Q8N9H8 876 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 CTCFLQ8NI51 663 aaPredicted RBP3.08□□□□□ -1.92
SPG11-222ENST00000560435 BICD2Q8TD16 824 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 RUNDC1Q96C34 613 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 ZNF419Q96HQ0 510 aaPredicted RBP3.08□□□□□ -1.92
SPG11-222ENST00000560435 IL25Q9H293 177 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 PCDH12Q9NPG4 1184 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 TBC1D23Q9NUY8 699 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 TMOD4Q9NZQ9 345 aa3.08□□□□□ -1.92
SPG11-222ENST00000560435 CXorf65A6NEN9 183 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 M0QZQ0 153 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 MYF5P13349 255 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 DAOP14920 347 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 SLC5A2P31639 672 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 SLC16A2P36021 539 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 CACNB3P54284 484 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 GRSF1Q12849 480 aaKnown RBP eCLIP3.07□□□□□ -1.92
SPG11-222ENST00000560435 TRAF3Q13114 568 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 CBFBQ13951 182 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 GALNT3Q14435 633 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 POLD3Q15054 466 aaPredicted RBP3.07□□□□□ -1.92
SPG11-222ENST00000560435 C16orf89Q6UX73 402 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 PIK3AP1Q6ZUJ8 805 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 FAM217AQ8IXS0 508 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 TCP11L2Q8N4U5 519 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 SRFBP1Q8NEF9 429 aaKnown RBP3.07□□□□□ -1.92
SPG11-222ENST00000560435 LRTOMTQ8WZ04 291 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 EIF3CQ99613 913 aaKnown RBP3.07□□□□□ -1.92
SPG11-222ENST00000560435 POLDIP3Q9BY77 421 aaKnown RBP3.07□□□□□ -1.92
SPG11-222ENST00000560435 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.07□□□□□ -1.92
SPG11-222ENST00000560435 ZNF180Q9UJW8 692 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 TNFSF13BQ9Y275 285 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 COL4A3BPQ9Y5P4 624 aa3.07□□□□□ -1.92
SPG11-222ENST00000560435 A0A087WZ62 844 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 MSI1O43347 362 aaKnown RBP3.06□□□□□ -1.92
SPG11-222ENST00000560435 KCNJ13O60928 360 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 COQ9O75208 318 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 KAT7O95251 611 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 COL2A1P02458 1487 aaPredicted RBP3.06□□□□□ -1.92
SPG11-222ENST00000560435 ANXA2P07355 339 aaKnown RBP3.06□□□□□ -1.92
SPG11-222ENST00000560435 ANOS1P23352 680 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 AMTP48728 403 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 NSUN2Q08J23 767 aaKnown RBP eCLIP3.06□□□□□ -1.92
SPG11-222ENST00000560435 HNF4GQ14541 408 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 C10orf76Q5T2E6 689 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 FAXCQ5TGI0 409 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 RNF44Q7L0R7 432 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 ZNF771Q7L3S4 317 aaPredicted RBP3.06□□□□□ -1.92
SPG11-222ENST00000560435 LMNTD1Q8N9Z9 388 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 ADPRHL1Q8NDY3 354 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 APOLD1Q96LR9 279 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 RTFDC1Q9BY42 306 aaPredicted RBP3.06□□□□□ -1.92
SPG11-222ENST00000560435 B3GNT4Q9C0J1 378 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 EGLN1Q9GZT9 426 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 TXNRD2Q9NNW7 524 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 TYW1Q9NV66 732 aaKnown RBP3.06□□□□□ -1.92
SPG11-222ENST00000560435 PCDHB7Q9Y5E2 793 aa3.06□□□□□ -1.92
SPG11-222ENST00000560435 TP53BP1Q12888 1972 aaPredicted RBP3.05□□□□□ -1.92
SPG11-222ENST00000560435 ZSCAN9O15535 394 aaPredicted RBP3.05□□□□□ -1.92
SPG11-222ENST00000560435 MST1P26927 711 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 TNFSF8P32971 234 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 MCL1Q07820 350 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 STPG1Q5TH74 334 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 MRNIPQ6NTE8 343 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 CRTC1Q6UUV9 634 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 SMIM29Q86T20 159 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 ADGRF3Q8IZF5 1079 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 FAM185AQ8N0U4 392 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 LILRB1Q8NHL6 650 aaPredicted RBP3.05□□□□□ -1.92
SPG11-222ENST00000560435 EPYCQ99645 322 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 ABHD16BQ9H3Z7 469 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 OCIAD1Q9NX40 245 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 IL36RNQ9UBH0 155 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 SLC4A4Q9Y6R1 1079 aa3.05□□□□□ -1.92
SPG11-222ENST00000560435 LMTK3Q96Q04 1460 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 OR2W5A6NFC9 320 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 SAC3D1A6NKF1 404 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 ASAP2O43150 1006 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 LMX1BO60663 402 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 RFPL1O75677 317 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 SOX30O94993 753 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 GNLYP22749 145 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 NUDT6P53370 316 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 ATP1A4Q13733 1029 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 FCN2Q15485 313 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 RNF220Q5VTB9 566 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 UHRF2Q96PU4 802 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 NUDT22Q9BRQ3 303 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 SORBS1Q9BX66 1292 aaKnown RBP3.04□□□□□ -1.92
SPG11-222ENST00000560435 FAM204AQ9H8W3 233 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 SFXN1Q9H9B4 322 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms