RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CDH18Q13634 790 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 HADHQ16836 314 aaKnown RBP22.42■■□□□ 1.18
SNX1-210ENST00000560260 TMEM215Q68D42 235 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 RWDD4Q6NW29 188 aaKnown RBP22.42■■□□□ 1.18
SNX1-210ENST00000560260 KIAA0907Q7Z7F0 614 aaPredicted RBP22.42■■□□□ 1.18
SNX1-210ENST00000560260 TXLNBQ8N3L3 684 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 EPAS1Q99814 870 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 NDFIP2Q9NV92 336 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 INTS6Q9UL03 887 aaKnown RBP22.42■■□□□ 1.18
SNX1-210ENST00000560260 MRPS17Q9Y2R5 130 aaKnown RBP22.42■■□□□ 1.18
SNX1-210ENST00000560260 A0A0A0MRY4 1105 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 H0Y626 953 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 STK25O00506 426 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 SPOPO43791 374 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 CLDN11O75508 207 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 CD48P09326 243 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 GOT1P17174 413 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 DRD1P21728 446 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 SLC1A1P43005 524 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 NUMBP49757 651 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 NAP1L1P55209 391 aaKnown RBP22.41■■□□□ 1.18
SNX1-210ENST00000560260 FUT11Q495W5 492 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 PPP6R3Q5H9R7 873 aaPredicted RBP22.41■■□□□ 1.18
SNX1-210ENST00000560260 ZNF662Q6ZS27 426 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 Q6ZS52 159 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 BMP8AQ7Z5Y6 402 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 DAAM2Q86T65 1068 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 SUGP1Q8IWZ8 645 aaKnown RBP22.41■■□□□ 1.18
SNX1-210ENST00000560260 FAM71BQ8TC56 605 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 CWC15Q9P013 229 aaKnown RBP22.41■■□□□ 1.18
SNX1-210ENST00000560260 GGA2Q9UJY4 613 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 PYCARDQ9ULZ3 195 aa22.41■■□□□ 1.18
SNX1-210ENST00000560260 MUC22E2RYF6 1773 aaPredicted RBP22.41■■□□□ 1.18
SNX1-210ENST00000560260 EEF2KO00418 725 aaKnown RBP22.4■■□□□ 1.18
SNX1-210ENST00000560260 DCNP07585 359 aaKnown RBP22.4■■□□□ 1.18
SNX1-210ENST00000560260 PABPC1P11940 636 aaKnown RBP22.4■■□□□ 1.18
SNX1-210ENST00000560260 RHOQP17081 205 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 EPHB2P29323 1055 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 CSKP41240 450 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 MARCKSL1P49006 195 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 TPI1P60174 286 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 EMC10Q5UCC4 262 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 POLNQ7Z5Q5 900 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 ANKS1BQ7Z6G8 1248 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 ADIPOR2Q86V24 386 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 TSC1Q92574 1164 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 PBXIP1Q96AQ6 731 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 OSBPL6Q9BZF3 934 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 TSGA10Q9BZW7 698 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 LMAN1LQ9HAT1 526 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 LZTFL1Q9NQ48 299 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 TMEM248Q9NWD8 314 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 DLGAP2Q9P1A6 1054 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 GUCA1BQ9UMX6 200 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 TBC1D30Q9Y2I9 924 aa22.4■■□□□ 1.18
SNX1-210ENST00000560260 DLL1O00548 723 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 PALMO75781 387 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 TNNT1P13805 278 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 AOC1P19801 751 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 MZF1P28698 734 aaPredicted RBP22.39■■□□□ 1.18
SNX1-210ENST00000560260 CDH6P55285 790 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 SEC13P55735 322 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 DPYSQ14117 519 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 GAS6Q14393 721 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 PKN3Q6P5Z2 889 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 APCDD1Q8J025 514 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 RTL3Q8N8U3 475 aaKnown RBP22.39■■□□□ 1.18
SNX1-210ENST00000560260 RAPGEF5Q92565 580 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 KRT35Q92764 455 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 CLDN23Q96B33 292 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 ALG14Q96F25 216 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 CALR3Q96L12 384 aaKnown RBP22.39■■□□□ 1.18
SNX1-210ENST00000560260 NELL2Q99435 816 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 ZDHHC4Q9NPG8 344 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 MFHAS1Q9Y4C4 1052 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 OR51B4Q9Y5P0 310 aa22.39■■□□□ 1.18
SNX1-210ENST00000560260 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.38■■□□□ 1.17
SNX1-210ENST00000560260 TBC1D3BA6NDS4 549 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 RNF40O75150 1001 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 RHOCP08134 193 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 KRT7P08729 469 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 IL4RP24394 825 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 HTR7P34969 479 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 KIR2DL1P43626 348 aaPredicted RBP22.38■■□□□ 1.17
SNX1-210ENST00000560260 MMRN1Q13201 1228 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 ZNF177Q13360 481 aaPredicted RBP22.38■■□□□ 1.17
SNX1-210ENST00000560260 PITRM1Q5JRX3 1037 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 LRRC38Q5VT99 294 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 RFX8Q6ZV50 586 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 REXO1L1PQ8IX06 675 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 RHOT1Q8IXI2 618 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 FBXL6Q8N531 539 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 TMEM105Q8N8V8 129 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 SORCS1Q8WY21 1168 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 CSPG4P5Q96PW8 444 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 NOL6Q9H6R4 1146 aaKnown RBP22.38■■□□□ 1.17
SNX1-210ENST00000560260 SIT1Q9Y3P8 196 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.38■■□□□ 1.17
SNX1-210ENST00000560260 KMT2EQ8IZD2 1858 aa22.38■■□□□ 1.17
SNX1-210ENST00000560260 CHD5Q8TDI0 1954 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms