RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CLUHO75153 1309 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 DRGXA6NNA5 263 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 A6NNZ2 444 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 KCNK1O00180 336 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 CTSAP10619 480 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 RHOQP17081 205 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 CCNCP24863 283 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 ATP5C1P36542 298 aaKnown RBP13.02□□□□□ -0.32
USP3-213ENST00000559711 SLCO1A2P46721 670 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 TUBB8Q3ZCM7 444 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 ZNF534Q76KX8 674 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 TDRPQ86YL5 185 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 ARFGAP2Q8N6H7 521 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 AUTS2Q8WXX7 1259 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 CELF6Q96J87 481 aaKnown RBP13.02□□□□□ -0.32
USP3-213ENST00000559711 ZNF512Q96ME7 567 aaPredicted RBP13.02□□□□□ -0.32
USP3-213ENST00000559711 PRMT1Q99873 361 aaKnown RBP13.02□□□□□ -0.32
USP3-213ENST00000559711 VPS37BQ9H9H4 285 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 PPCSQ9HAB8 311 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 XAB2Q9HCS7 855 aaKnown RBP13.02□□□□□ -0.32
USP3-213ENST00000559711 EURLQ9NYK6 297 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 DONSONQ9NYP3 566 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 SEPT10Q9P0V9 454 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 SSX2IPQ9Y2D8 614 aa13.02□□□□□ -0.32
USP3-213ENST00000559711 SMIM23A6NLE4 172 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 TEX28O15482 410 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 SHOX2O60902 331 aaPredicted RBP13.02□□□□□ -0.33
USP3-213ENST00000559711 CDH16O75309 829 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 AVILO75366 819 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 MLNP12872 115 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 ELF1P32519 619 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 PHBP35232 272 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 ELK3P41970 407 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 PPP3CCP48454 512 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 IFI35P80217 286 aaPredicted RBP13.02□□□□□ -0.33
USP3-213ENST00000559711 SARNPP82979 210 aaKnown RBP13.02□□□□□ -0.33
USP3-213ENST00000559711 VEPH1Q14D04 833 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 RASA2Q15283 850 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 TEX44Q53QW1 395 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 DNAJC21Q5F1R6 531 aaKnown RBP13.02□□□□□ -0.33
USP3-213ENST00000559711 HECTD3Q5T447 861 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 SYCP2LQ5T4T6 812 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 NUGGCQ68CJ6 796 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 LRRC31Q6UY01 552 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 C3orf62Q6ZUJ4 267 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 PID1Q7Z2X4 250 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 IGDCC3Q8IVU1 814 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 PALM2Q8IXS6 379 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 UMODL1-AS1Q8N2C9 162 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 AGGF1Q8N302 714 aaeCLIP13.02□□□□□ -0.33
USP3-213ENST00000559711 RIBC1Q8N443 379 aaPredicted RBP13.02□□□□□ -0.33
USP3-213ENST00000559711 SP7Q8TDD2 431 aaPredicted RBP13.02□□□□□ -0.33
USP3-213ENST00000559711 ZYG11BQ9C0D3 744 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 SLC39A8Q9C0K1 460 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 MCOLN1Q9GZU1 580 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 TRPM5Q9NZQ8 1165 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 MPP6Q9NZW5 540 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 CXXC1Q9P0U4 656 aaPredicted RBP13.02□□□□□ -0.33
USP3-213ENST00000559711 FETUBQ9UGM5 382 aa13.02□□□□□ -0.33
USP3-213ENST00000559711 SPAG6O75602 509 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 DNAJB2P25686 324 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 PSMB4P28070 264 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 PPP2R2AP63151 447 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 FBXL22Q6P050 247 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 PSRC1Q6PGN9 363 aaPredicted RBP13.01□□□□□ -0.33
USP3-213ENST00000559711 PHOSPHO2Q8TCD6 241 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 DEPDC1BQ8WUY9 529 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 HERVK_113Q902F9 699 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 SIGLEC10Q96LC7 697 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 TEKT5Q96M29 485 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 RAD9AQ99638 391 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 ZBED2Q9BTP6 218 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 CEP41Q9BYV8 373 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 NDFIP2Q9NV92 336 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 TMEM248Q9NWD8 314 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.01□□□□□ -0.33
USP3-213ENST00000559711 KLHL8Q9P2G9 620 aaPredicted RBP13.01□□□□□ -0.33
USP3-213ENST00000559711 RABGEF1Q9UJ41 708 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 VANGL2Q9ULK5 521 aa13.01□□□□□ -0.33
USP3-213ENST00000559711 EXOC1LA0A1B0GW35 172 aa13□□□□□ -0.33
USP3-213ENST00000559711 DFFAO00273 331 aa13□□□□□ -0.33
USP3-213ENST00000559711 PRRG1O14668 218 aa13□□□□□ -0.33
USP3-213ENST00000559711 MATN3O15232 486 aa13□□□□□ -0.33
USP3-213ENST00000559711 ZBTB24O43167 697 aaPredicted RBP13□□□□□ -0.33
USP3-213ENST00000559711 COCHO43405 550 aa13□□□□□ -0.33
USP3-213ENST00000559711 MAFKO60675 156 aa13□□□□□ -0.33
USP3-213ENST00000559711 HMBSP08397 361 aa13□□□□□ -0.33
USP3-213ENST00000559711 ATP2A2P16615 1042 aaKnown RBP13□□□□□ -0.33
USP3-213ENST00000559711 GCAP28676 217 aa13□□□□□ -0.33
USP3-213ENST00000559711 ATP5DP30049 168 aa13□□□□□ -0.33
USP3-213ENST00000559711 SSTR1P30872 391 aa13□□□□□ -0.33
USP3-213ENST00000559711 HPDP32754 393 aaPredicted RBP13□□□□□ -0.33
USP3-213ENST00000559711 CD68P34810 354 aaPredicted RBP13□□□□□ -0.33
USP3-213ENST00000559711 MMP13P45452 471 aa13□□□□□ -0.33
USP3-213ENST00000559711 KCNQ1P51787 676 aa13□□□□□ -0.33
USP3-213ENST00000559711 NDST2P52849 883 aa13□□□□□ -0.33
USP3-213ENST00000559711 TWF1Q12792 350 aa13□□□□□ -0.33
USP3-213ENST00000559711 ZBTB17Q13105 803 aa13□□□□□ -0.33
USP3-213ENST00000559711 MTM1Q13496 603 aa13□□□□□ -0.33
USP3-213ENST00000559711 TAF12Q16514 161 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms