RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 C1orf122Q6ZSJ8 110 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 CEP68Q76N32 757 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 TRAPPC11Q7Z392 1133 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 ZNF677Q86XU0 584 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 GALNT6Q8NCL4 622 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 APBB2Q92870 758 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 FATE1Q969F0 183 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 HDAC10Q969S8 669 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 KIAA1191Q96A73 305 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 LENG1Q96BZ8 264 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 ZBTB45Q96K62 511 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 UBXN10Q96LJ8 280 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 TOX2Q96NM4 488 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 EIF3CQ99613 913 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 LBHD1Q9BQE6 289 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 CRACR2AQ9BSW2 395 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 DUSP23Q9BVJ7 150 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 JAM3Q9BX67 310 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 CDT1Q9H211 546 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 PDZD7Q9H5P4 517 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 HAUS4Q9H6D7 363 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 NHEJ1Q9H9Q4 299 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 CYP3A43Q9HB55 503 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 PDE11AQ9HCR9 933 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 SLC6A20Q9NP91 592 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 UBE2TQ9NPD8 197 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 MYO1AQ9UBC5 1043 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 CDC23Q9UJX2 597 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 ITGA11Q9UKX5 1188 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 KIAA1257Q9ULG3 409 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 UBQLN1Q9UMX0 589 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 EDARQ9UNE0 448 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 PIN4Q9Y237 131 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 TTLL3Q9Y4R7 772 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 MGAMO43451 1857 aa5.4□□□□□ -1.55
LDLR-209ENST00000558528 TRIOO75962 3097 aa5.4□□□□□ -1.55
LDLR-209ENST00000558528 CCDC154A6NI56 674 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 LRRC53A6NM62 1247 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 LACTBL1A8MY62 500 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 PIK3R2O00459 728 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 ABLIM1O14639 778 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 KPNA5O15131 536 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 HTRA2O43464 458 aaPredicted RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 OIP5O43482 229 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 ZNF623O75123 536 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 BAIAP3O94812 1187 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 NOL4O94818 638 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 NDUFA10O95299 355 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 HLA-DRAP01903 254 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 NFICP08651 508 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 IQCF3P0C7M6 154 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 KCNE1P15382 129 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 ITGB8P26012 769 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 HOXA11P31270 313 aaPredicted RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 RFC2P35250 354 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 CDK7P50613 346 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 SNX16P57768 344 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 DLG4P78352 724 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 TFAMQ00059 246 aaKnown RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 TNK2Q07912 1038 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 MGAT3Q09327 533 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 KIF5AQ12840 1032 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 MALLQ13021 153 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 TUBB2AQ13885 445 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 DRAP1Q14919 205 aaPredicted RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 TMEM132DQ14C87 1099 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 PTPN14Q15678 1187 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 LRRC26Q2I0M4 334 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 CBWD6Q4V339 395 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 CCDC157Q569K6 752 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 ZNF667Q5HYK9 610 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 PITRM1Q5JRX3 1037 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 CBWD3Q5JTY5 395 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 DNTTIP2Q5QJE6 756 aaKnown RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 CBWD5Q5RIA9 395 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 HLA-DQA1Q5Y7H0 255 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 SEZ6L2Q6UXD5 910 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 TRIM72Q6ZMU5 477 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 KIAA1328Q86T90 577 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 TTC7BQ86TV6 843 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 TSPYL5Q86VY4 417 aaPredicted RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 CPNE8Q86YQ8 564 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 SUGP1Q8IWZ8 645 aaKnown RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 NPAS3Q8IXF0 933 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 LRRC52Q8N7C0 313 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 LMO3Q8TAP4 145 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 ZSCAN18Q8TBC5 510 aaPredicted RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 HDAC2Q92769 488 aaKnown RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 RGMAQ96B86 450 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 TBC1D20Q96BZ9 403 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 CPB2Q96IY4 423 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 ZNF560Q96MR9 790 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 ZNF830Q96NB3 372 aaPredicted RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 TUBB2BQ9BVA1 445 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 CDADC1Q9BWV3 514 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 TTLL2Q9BWV7 592 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 SENP6Q9GZR1 1112 aaPredicted RBP5.39□□□□□ -1.55
LDLR-209ENST00000558528 MIS12Q9H081 205 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 GANQ9H2C0 597 aa5.39□□□□□ -1.55
LDLR-209ENST00000558528 MINDY3Q9H8M7 445 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms