RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RHOBTB2Q9BYZ6 727 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 GCOM2Q9BZD3 368 aaPredicted RBP13.21□□□□□ -0.29
LDLR-207ENST00000558013 PLEKHA5Q9HAU0 1116 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 GTF2IRD1Q9UHL9 959 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 YJEFN3A6XGL0 299 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 E9PBE3 544 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 DCXO43602 365 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 KLHL41O60662 606 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 LTFP02788 710 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 LILRA4P59901 499 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 THEMIS2Q5TEJ8 643 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 FSTL4Q6MZW2 842 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 NOTUMQ6P988 496 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 DPP9Q86TI2 863 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 ZNF781Q8N8C0 355 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 SLC7A14Q8TBB6 771 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 CERS2Q96G23 380 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 ANKRD27Q96NW4 1050 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 CHRAC1Q9NRG0 131 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 RNF181Q9P0P0 153 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 KLHL8Q9P2G9 620 aaPredicted RBP13.21□□□□□ -0.3
LDLR-207ENST00000558013 APOBEC2Q9Y235 224 aaKnown RBP13.21□□□□□ -0.3
LDLR-207ENST00000558013 LRCH1Q9Y2L9 728 aa13.21□□□□□ -0.3
LDLR-207ENST00000558013 GOLGA8QA0A0J9YX86 632 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 GOLGA8OA6NCC3 632 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 GOLGA8NF8WBI6 632 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 LIN7AO14910 233 aaPredicted RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 ZBTB24O43167 697 aaPredicted RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 MAP3K7O43318 606 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 GLRA3O75311 464 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 RALBP11234 206 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 ERCC2P18074 760 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 FDFT1P37268 417 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 IFRD2Q12894 506 aaPredicted RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 TCHHL1Q5QJ38 904 aaPredicted RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 FOXB2Q5VYV0 432 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 RAPH1Q70E73 1250 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 FASTKD5Q7L8L6 764 aaKnown RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 STRADAQ7RTN6 431 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 STRA8Q7Z7C7 330 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 MYLK4Q86YV6 388 aaPredicted RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 CCNJLQ8IV13 435 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 DNAAF3Q8N9W5 541 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 EDEM1Q92611 657 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 CDKL2Q92772 493 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 TXNDC16Q9P2K2 825 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 PLXNA1Q9UIW2 1896 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 EEF2KO00418 725 aaKnown RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 ZBTB14O43829 449 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 AOC1P19801 751 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 SLC9B1Q4ZJI4 515 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 FRMD7Q6ZUT3 714 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 ZNF410Q86VK4 478 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 HPS6Q86YV9 775 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 ATP2A3Q93084 1043 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 ZNF184Q99676 751 aaPredicted RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 VTA1Q9NP79 307 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 UBQLN1Q9UMX0 589 aaKnown RBP13.2□□□□□ -0.3
LDLR-207ENST00000558013 SOX13Q9UN79 622 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 HTTP42858 3142 aa13.2□□□□□ -0.3
LDLR-207ENST00000558013 ZNF487B1APH4 448 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 PDHXO00330 501 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 OPHN1O60890 802 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 SERPINE1P05121 402 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 POLBP06746 335 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 SMIM10L2AP0DMW4 78 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 SMIM10L2BP0DMW5 78 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 CYP2C9P11712 490 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 DARSP14868 501 aaKnown RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 PTPN3P26045 913 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 RPL34P49207 117 aaKnown RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 TKTL1P51854 596 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 MRPS35P82673 323 aaKnown RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 DEUP1Q05D60 604 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 EFHC1Q5JVL4 640 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 FAM219BQ5XKK7 198 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 LPCAT4Q643R3 524 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 CLEC20AQ6ZU45 233 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 NET1Q7Z628 596 aaPredicted RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 ARHGAP24Q8N264 748 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 NPY6RQ99463 290 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 LAMA2P24043 3122 aaKnown RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 TREHO43280 583 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 HUS1O60921 280 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 CIB2O75838 187 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 CHRNGP07510 517 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 SKIP12755 728 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 CPA3P15088 417 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 CD68P34810 354 aaPredicted RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 MSX2P35548 267 aaPredicted RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 ZBTB17Q13105 803 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 DPYSQ14117 519 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 OR52E8Q6IFG1 317 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 C4orf22Q6V702 233 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 SPATA6LQ8N4H0 392 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 PNPLA1Q8N8W4 532 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 CELF6Q96J87 481 aaKnown RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 DUSP16Q9BY84 665 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 WDR55Q9H6Y2 383 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms