RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 FKBP6O75344 327 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 CRTAMO95727 393 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 PFKMP08237 780 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 CPA3P15088 417 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 CDH15P55291 814 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 ABCE1P61221 599 aaKnown RBP12.64□□□□□ -0.39
LDLR-205ENST00000557933 RALGDSQ12967 914 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 LSAMPQ13449 338 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 ANKRD20A4Q4UJ75 823 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 C9orf131Q5VYM1 1079 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 ZNF280DQ6N043 979 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 ZBTB8OSQ8IWT0 167 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 TRIM42Q8IWZ5 723 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 FBXW8Q8N3Y1 598 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 DRAXINQ8NBI3 349 aaPredicted RBP12.64□□□□□ -0.39
LDLR-205ENST00000557933 ZFP28Q8NHY6 868 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 SLC45A3Q96JT2 553 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 TEX13BQ9BXU2 312 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 FAM192AQ9GZU8 254 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 SNX15Q9NRS6 342 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 PCDHA11Q9Y5I1 949 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 A0A087WZ62 844 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 SERPINE1P05121 402 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 P4HA1P13674 534 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 GABRB2P47870 512 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 MAPK10P53779 464 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 NME3Q13232 169 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 SOWAHAQ2M3V2 549 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 MPZL3Q6UWV2 235 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 STRA8Q7Z7C7 330 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 CCNYL1Q8N7R7 359 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 DNAAF3Q8N9W5 541 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 PKP2Q99959 881 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 FDXACB1Q9BRP7 624 aaPredicted RBP12.64□□□□□ -0.39
LDLR-205ENST00000557933 TRIM8Q9BZR9 551 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 CACNG4Q9UBN1 327 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 AP4E1Q9UPM8 1137 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 EVPLQ92817 2033 aa12.64□□□□□ -0.39
LDLR-205ENST00000557933 UNCXA6NJT0 531 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 PIGRP01833 764 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 TSPAN8P19075 237 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 ZNF618Q5T7W0 954 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 SLC9A4Q6AI14 798 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 EFCAB12Q6NXP0 572 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 FBXO16Q8IX29 292 aaPredicted RBP12.63□□□□□ -0.39
LDLR-205ENST00000557933 TDRD5Q8NAT2 981 aaKnown RBP12.63□□□□□ -0.39
LDLR-205ENST00000557933 RDM1Q8NG50 284 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 DIS3LQ8TF46 1054 aaKnown RBP12.63□□□□□ -0.39
LDLR-205ENST00000557933 ATP2A3Q93084 1043 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 RPL10LQ96L21 214 aaKnown RBP12.63□□□□□ -0.39
LDLR-205ENST00000557933 LRGUKQ96M69 825 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 KCTD15Q96SI1 283 aaPredicted RBP12.63□□□□□ -0.39
LDLR-205ENST00000557933 NRBP2Q9NSY0 501 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 HSFX1Q9UBD0 423 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 EFR3BQ9Y2G0 817 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 NME7Q9Y5B8 376 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 WDR81Q562E7 1941 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 RNF103O00237 685 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 ZNF195O14628 629 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 PTPRAP18433 802 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 MCCD1P59942 119 aaPredicted RBP12.63□□□□□ -0.39
LDLR-205ENST00000557933 PRAMEP78395 509 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 MYBPC1Q00872 1141 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 CERCAMQ5T4B2 595 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 KYAT3Q6YP21 454 aaKnown RBP12.63□□□□□ -0.39
LDLR-205ENST00000557933 PQLC1Q8N2U9 271 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 ZNF280CQ8ND82 737 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 OR6B3Q8NGW1 331 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 SLC39A3Q9BRY0 314 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 ADA2Q9NZK5 511 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 SLC39A10Q9ULF5 831 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 GNEQ9Y223 722 aaKnown RBP12.63□□□□□ -0.39
LDLR-205ENST00000557933 TLL2Q9Y6L7 1015 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 CROCCQ5TZA2 2017 aa12.63□□□□□ -0.39
LDLR-205ENST00000557933 NEMP2A6NFY4 417 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 SPAG6O75602 509 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 NAGLUP54802 743 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 NME5P56597 212 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 DYNC1I2Q13409 638 aaKnown RBP12.62□□□□□ -0.39
LDLR-205ENST00000557933 CEACAM7Q14002 265 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 FAM47CQ5HY64 1035 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 PGM2L1Q6PCE3 622 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 PID1Q7Z2X4 250 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.62□□□□□ -0.392e-7■□□□□ 10.3
LDLR-205ENST00000557933 TRPM4Q8TD43 1214 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 ACTRT2Q8TDY3 377 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 FNIP1Q8TF40 1166 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 ARNTL2Q8WYA1 636 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 KHSRPQ92945 711 aaKnown RBP eCLIP12.62□□□□□ -0.39
LDLR-205ENST00000557933 ATP6V1E2Q96A05 226 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 HSPBAP1Q96EW2 488 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 SCYL1Q96KG9 808 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 KLHL32Q96NJ5 620 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 CSPG4P5Q96PW8 444 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 LHX5Q9H2C1 402 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 TMEM165Q9HC07 324 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 TCF7L2Q9NQB0 619 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 ZNF180Q9UJW8 692 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 ARHGAP26Q9UNA1 814 aa12.62□□□□□ -0.39
LDLR-205ENST00000557933 SNX10Q9Y5X0 201 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms