RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 RDH11Q8TC12 318 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 CCDC124Q96CT7 223 aaKnown RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 CERS2Q96G23 380 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 TRIM56Q9BRZ2 755 aaKnown RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 MRPS26Q9BYN8 205 aaKnown RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 COG4Q9H9E3 785 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 TLL2Q9Y6L7 1015 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 RGSL1A5PLK6 1076 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 PAPSS1O43252 624 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 DCXO43602 365 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 ADORA2AP29274 412 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 RGS7P49802 495 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 ERFP50548 548 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 HTRA3P83110 453 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 LRRC36Q1X8D7 754 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 NOL9Q5SY16 702 aaKnown RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 ARHGAP17Q68EM7 881 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 DDI1Q8WTU0 396 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 PRICKLE1Q96MT3 831 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 SMARCAD1Q9H4L7 1026 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 SUDS3Q9H7L9 328 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 SNX15Q9NRS6 342 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 MTMR10Q9NXD2 777 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 DPP3Q9NY33 737 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 IGSF9Q9P2J2 1179 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 PADI4Q9UM07 663 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 SCAF8Q9UPN6 1271 aaKnown RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 INPP5FQ9Y2H2 1132 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 SLCO1B7G3V0H7 640 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 TRIM13O60858 407 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 MAP3K6O95382 1288 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 MGAT1P26572 445 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 LIMK2P53671 638 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 FKBP1BP68106 108 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 PDK1Q15118 436 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 SLC10A6Q3KNW5 377 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 CELF3Q5SZQ8 465 aaKnown RBP16.67■□□□□ 0.26
SHMT2-232ENST00000557487 EFCAB12Q6NXP0 572 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 LBX2Q6XYB7 198 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 TMC7Q7Z402 723 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 UNC93AQ86WB7 457 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 CPSF7Q8N684 471 aaKnown RBP16.67■□□□□ 0.26
SHMT2-232ENST00000557487 KYQ8NBH2 561 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 LZICQ8WZA0 190 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 DCUN1D1Q96GG9 259 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 HIC2Q96JB3 615 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 HHIPL1Q96JK4 782 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 LRGUKQ96M69 825 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 KCTD15Q96SI1 283 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-232ENST00000557487 RBBP8Q99708 897 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 DNAI2Q9GZS0 605 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 ZNF696Q9H7X3 374 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 LRRC40Q9H9A6 602 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 TCF7L2Q9NQB0 619 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 MRGBPQ9NV56 204 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 USP3Q9Y6I4 520 aa16.67■□□□□ 0.26
SHMT2-232ENST00000557487 SOWAHBA6NEL2 793 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 PIK3R2O00459 728 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 TXNDC9O14530 226 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 TNFAIP8O95379 198 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 DNAJB1P25685 340 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 GRIA2P42262 883 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 ACADSBP45954 432 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 RPL34P49207 117 aaKnown RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 PABPC1LQ4VXU2 614 aaKnown RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 PPP1R26Q5T8A7 1209 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 SAPCD2Q86UD0 394 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 TTC30AQ86WT1 665 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 PHTF2Q8N3S3 785 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 RNF217Q8TC41 542 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 ILKAPQ9H0C8 392 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 THEGQ9P2T0 379 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 VTI1BQ9UEU0 232 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 DERAQ9Y315 318 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 GOLGA8QA0A0J9YX86 632 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 LOC100653049A0A140TA62 436 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 GOLGA8OA6NCC3 632 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 GOLGA8NF8WBI6 632 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 KRT34O76011 436 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 FBXO21O94952 628 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 CLPTM1O96005 669 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 CAPNS1P04632 268 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 SMIM18P0DKX4 95 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 ARRB2P32121 409 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 CSE1LP55060 971 aaKnown RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 SESN2P58004 480 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 CREB5Q02930 508 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 RFTN1Q14699 578 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 CNGA3Q16281 694 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 USP41Q3LFD5 358 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 TCHHL1Q5QJ38 904 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 BORAQ6PGQ7 559 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 B3GNT6Q6ZMB0 384 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 BNC2Q6ZN30 1099 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 C2orf69Q8N8R5 385 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 SLC7A14Q8TBB6 771 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 ZNF408Q9H9D4 720 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 CNOT11Q9UKZ1 510 aaKnown RBP16.66■□□□□ 0.26
SHMT2-232ENST00000557487 PHF24Q9UPV7 400 aa16.66■□□□□ 0.26
SHMT2-232ENST00000557487 KAT6AQ92794 2004 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms