RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CARD6Q9BX69 1037 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 GPR174Q9BXC1 333 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 CYP3A43Q9HB55 503 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 LUC7LQ9NQ29 371 aaKnown RBP13.05□□□□□ -0.32
SHMT2-230ENST00000557427 RAB20Q9NX57 234 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 EHD2Q9NZN4 543 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 PCDHA13Q9Y5I0 950 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 SNX11Q9Y5W9 270 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 AK5Q9Y6K8 562 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 TMEM131Q92545 1883 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 ATP8B3O60423 1300 aa13.05□□□□□ -0.32
SHMT2-230ENST00000557427 USP9XQ93008 2570 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 RCCD1A6NED2 376 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 METTL12A8MUP2 240 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 PRRT4C9JH25 899 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 P4HA2O15460 535 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 HOXC11O43248 304 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 BEST1O76090 585 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 OAS1P00973 400 aaKnown RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 JUPP14923 745 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 PRKCIP41743 596 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CSNK1EP49674 416 aaKnown RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 PDE6CP51160 858 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 MAP3K7CLP57077 242 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 JAM2P57087 298 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 TARDBPQ13148 414 aaKnown RBP eCLIP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CBWD6Q4V339 395 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 TDRD12Q587J7 1177 aaKnown RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CBWD3Q5JTY5 395 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CBWD5Q5RIA9 395 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 C6orf118Q5T5N4 469 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 KIAA1324Q6UXG2 1013 aaKnown RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 TMEM25Q86YD3 366 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 SPACA3Q8IXA5 215 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CHPFQ8IZ52 775 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CEP112Q8N8E3 955 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CADM4Q8NFZ8 388 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CYFIP2Q96F07 1278 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 WBP1Q96G27 269 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 ZFRQ96KR1 1074 aaKnown RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CEP295NLQ96MC4 621 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 SMOQ99835 787 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 TTLL2Q9BWV7 592 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 NT5C1AQ9BXI3 368 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 NIF3L1Q9GZT8 377 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 LACRTQ9GZZ8 138 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 ITM2CQ9NQX7 267 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 KRT82Q9NSB4 513 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 USP36Q9P275 1121 aaKnown RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 DEC1Q9P2X7 70 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 TRIM10Q9UDY6 481 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 EIF2B4Q9UI10 523 aaKnown RBP13.04□□□□□ -0.32
SHMT2-230ENST00000557427 FHOD1Q9Y613 1164 aa13.04□□□□□ -0.32
SHMT2-230ENST00000557427 CBX4O00257 560 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 PMM2O15305 246 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 RTN3O95197 1032 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-230ENST00000557427 C6P13671 934 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 MAGEA1P43355 309 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 TUBB4BP68371 445 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 KLHL30Q0D2K2 578 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 NAA30Q147X3 362 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-230ENST00000557427 SUZ12Q15022 739 aaKnown RBP13.03□□□□□ -0.32
SHMT2-230ENST00000557427 SLC18A3Q16572 532 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 WHAMMP3Q1A5X7 153 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 UBXN4Q92575 508 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 FGF11Q92914 225 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 FBXO32Q969P5 355 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 WBP2Q969T9 261 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 SMARCD1Q96GM5 515 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 SLITRK1Q96PX8 696 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 SPAG5Q96R06 1193 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 NRSN2Q9GZP1 204 aa13.03□□□□□ -0.32
SHMT2-230ENST00000557427 DMAP1Q9NPF5 467 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-230ENST00000557427 MYLKQ15746 1914 aa13.02□□□□□ -0.32
SHMT2-230ENST00000557427 TEX15Q9BXT5 2789 aa13.02□□□□□ -0.32
SHMT2-230ENST00000557427 E2F8A0AVK6 867 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 ZBTB24O43167 697 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-230ENST00000557427 RRP9O43818 475 aaKnown RBP13.02□□□□□ -0.33
SHMT2-230ENST00000557427 GFPT2O94808 682 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 FERP16591 822 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 GRK6P43250 576 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 PPP3CCP48454 512 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 APBA1Q02410 837 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 INCA1Q0VD86 236 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 KCNT1Q5JUK3 1230 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 PAPD7Q5XG87 772 aaKnown RBP13.02□□□□□ -0.33
SHMT2-230ENST00000557427 RSRC2Q7L4I2 434 aaKnown RBP13.02□□□□□ -0.33
SHMT2-230ENST00000557427 IRF2BP2Q7Z5L9 587 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 METTL3Q86U44 580 aaKnown RBP13.02□□□□□ -0.33
SHMT2-230ENST00000557427 ERICH1Q86X53 443 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 BBS7Q8IWZ6 715 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 LRRN4CLQ8ND94 238 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 ZMIZ2Q8NF64 920 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 TRIM58Q8NG06 486 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 TTC9Q92623 222 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 ARID3AQ99856 593 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 DNAI2Q9GZS0 605 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 MKRN2Q9H000 416 aaKnown RBP13.02□□□□□ -0.33
SHMT2-230ENST00000557427 CISHQ9NSE2 258 aa13.02□□□□□ -0.33
SHMT2-230ENST00000557427 TBC1D14Q9P2M4 693 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms