RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CPSF2Q9P2I0 782 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 LRRC42Q9Y546 428 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 TEX264Q9Y6I9 313 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 NLRC5Q86WI3 1866 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 TTC3P53804 2025 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 MTMR11A4FU01 709 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 RNF103O00237 685 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 PSMD3O43242 534 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 LRIG2O94898 1065 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 APOEP02649 317 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 CLTBP09497 229 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 CCNB1P14635 433 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 DNAJB2P25686 324 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 TUFMP49411 452 aaKnown RBP12.98□□□□□ -0.33
SHMT2-229ENST00000557348 SLC18A1P54219 525 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 CCL23P55773 120 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 GALNT2Q10471 571 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 FNBP1LQ5T0N5 605 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 SLC8B1Q6J4K2 584 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 FBXO46Q6PJ61 603 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-229ENST00000557348 C3orf62Q6ZUJ4 267 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 SCD5Q86SK9 330 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 GPR65Q8IYL9 337 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 PDZD8Q8NEN9 1154 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 ABHD8Q96I13 439 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 ZNF333Q96JL9 665 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 SELENOSQ9BQE4 189 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 PPP1R12CQ9BZL4 782 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 PRDM12Q9H4Q4 367 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 RETREG1Q9H6L5 497 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 TXLNGQ9NUQ3 528 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 TMEM39AQ9NV64 488 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 EURLQ9NYK6 297 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 MTRRQ9UBK8 725 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 IKBKGQ9Y6K9 419 aa12.98□□□□□ -0.33
SHMT2-229ENST00000557348 A0A1W2PQH9 124 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 AMHP03971 560 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 HAPLN1P10915 354 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-229ENST00000557348 GARSP41250 739 aaKnown RBP12.97□□□□□ -0.33
SHMT2-229ENST00000557348 MAGEA3P43357 314 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 RASSF2P50749 326 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 IFRD2Q12894 506 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-229ENST00000557348 FASTKD3Q14CZ7 662 aaKnown RBP12.97□□□□□ -0.33
SHMT2-229ENST00000557348 NUGGCQ68CJ6 796 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 CYS1Q717R9 158 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 ASRGL1Q7L266 308 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 CTU1Q7Z7A3 348 aaKnown RBP12.97□□□□□ -0.33
SHMT2-229ENST00000557348 ATP6V0D2Q8N8Y2 350 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 COLGALT1Q8NBJ5 622 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 FBXO32Q969P5 355 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 KLHL29Q96CT2 875 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 FAM210AQ96ND0 272 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 CCDC28BQ9BUN5 200 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 MCOLN1Q9GZU1 580 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 SSU72Q9NP77 194 aaKnown RBP12.97□□□□□ -0.33
SHMT2-229ENST00000557348 MAFFQ9ULX9 164 aa12.97□□□□□ -0.33
SHMT2-229ENST00000557348 SMG5Q9UPR3 1016 aaKnown RBP12.97□□□□□ -0.33
SHMT2-229ENST00000557348 TCRBV7S3A2A0A539 114 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 RASA4BC9J798 803 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 RASA4O43374 803 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 PAGE1O75459 146 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 SNUPNO95149 360 aaKnown RBP12.96□□□□□ -0.33
SHMT2-229ENST00000557348 VAV1P15498 845 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 ELK3P41970 407 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 MNX1P50219 401 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-229ENST00000557348 RABGGTBP53611 331 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 NCALDP61601 193 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 IFI35P80217 286 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-229ENST00000557348 RING1Q06587 406 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 TRIP4Q15650 581 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-229ENST00000557348 LGSNQ5TDP6 509 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 MANEALQ5VSG8 457 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 TPGS2Q68CL5 300 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 TIGD7Q6NT04 549 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-229ENST00000557348 ZNF449Q6P9G9 518 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 DEFB128Q7Z7B8 93 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 EXOC3L1Q86VI1 746 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 ANKMY2Q8IV38 441 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 AGGF1Q8N302 714 aaeCLIP12.96□□□□□ -0.33
SHMT2-229ENST00000557348 FBF1Q8TES7 1133 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 AGAP11Q8TF27 550 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 INPP5DQ92835 1189 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 ALKBH8Q96BT7 664 aaKnown RBP12.96□□□□□ -0.33
SHMT2-229ENST00000557348 ARMC5Q96C12 935 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 STAMBPL1Q96FJ0 436 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 TSGA13Q96PP4 275 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 LGMNQ99538 433 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 TTLL2Q9BWV7 592 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 ETAA1Q9NY74 926 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 NKIRAS1Q9NYS0 192 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 RABGEF1Q9UJ41 708 aa12.96□□□□□ -0.33
SHMT2-229ENST00000557348 IQANK1A0A1B0GTG1 560 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 WASH4PA8MWX3 477 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 KCNU1A8MYU2 1149 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 FAM72CH0Y354 149 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 MAP3K6O95382 1288 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 EFEMP2O95967 443 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 LAG3P18627 525 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 CCNCP24863 283 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 MSH2P43246 934 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms