RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 BRMS1LQ5PSV4 323 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 MANEALQ5VSG8 457 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 KIAA1841Q6NSI8 718 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 OTOP2Q7RTS6 562 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 CROCCP2Q86T23 111 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 TOP1MTQ969P6 601 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 SERPINB11Q96P15 392 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC39A8Q9C0K1 460 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 EPN3Q9H201 632 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 C12orf65Q9H3J6 166 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 ACSS3Q9H6R3 686 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 IL37Q9NZH6 218 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 TTLL3Q9Y4R7 772 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 RANBP2P49792 3224 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 GOLGA6L7A0A1B0GV03 622 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC38A8A6NNN8 435 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 H7C4K7 107 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 GOLGA8RI6L899 631 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 CNTN5O94779 1100 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 JCHAINP01591 159 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 KRT15P19012 456 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 MAGEA3P43357 314 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 CES3Q6UWW8 571 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 UNC5AQ6ZN44 842 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 NLRP14Q86W24 1093 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 DCAKDQ8WVC6 231 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC39A13Q96H72 371 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 HAPLN3Q96S86 360 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 TRIM62Q9BVG3 475 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 STMN4Q9H169 189 aaPredicted RBP13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 C11orf49Q9H6J7 331 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 INTS9Q9NV88 658 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 TLR6Q9Y2C9 796 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 PDE4DIPQ5VU43 2346 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 MYO7AQ13402 2215 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC12A8A0AV02 714 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 OPHN1O60890 802 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 C1QAP02745 245 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 F7P08709 466 aaPredicted RBP13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 TPSB2P20231 275 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 MGAT1P26572 445 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 PHBP35232 272 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 GJA8P48165 433 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 PPP2R5DQ14738 602 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 TPSAB1Q15661 275 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 TAOK1Q7L7X3 1001 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 OTOP3Q7RTS5 596 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 TRABD2AQ86V40 505 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 HDAC11Q96DB2 347 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 MARCH2Q9P0N8 246 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 MTRRQ9UBK8 725 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 ANAPC1Q9H1A4 1944 aa13.07□□□□□ -0.32
VIPAS39-206ENST00000553888 FAM92AA1XBS5 289 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 SMAPO00193 183 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 NDUFAB1O14561 156 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 STK10O94804 968 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 CPP00450 1065 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 NFKB1P19838 968 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 KCNQ1P51787 676 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 ALFQ53S48 1182 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 MS4A13Q5J8X5 152 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 C1orf53Q5VUE5 145 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 RAP1GAP2Q684P5 730 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 MSANTD2Q6P1R3 559 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 CASC4Q6P4E1 433 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 PPP1R21Q6ZMI0 780 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 TADA2BQ86TJ2 420 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 RNF168Q8IYW5 571 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 MCUQ8NE86 351 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 ZSCAN18Q8TBC5 510 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 TBC1D31Q96DN5 1066 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 CCT8L2Q96SF2 557 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 PHACTR1Q9C0D0 580 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 YY1AP1Q9H869 796 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 CNOT10Q9H9A5 744 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 PSMC3IPQ9P2W1 217 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 RSPH14Q9UHP6 348 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 SPATA31D3P0C874 917 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 WDR5P61964 334 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 BTG3Q14201 252 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC8B1Q6J4K2 584 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 SPATA31D4Q6ZUB0 917 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 PDZD4Q76G19 769 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 TAX1BP1Q86VP1 789 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 CNTD1Q8N815 330 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 OR52K1Q8NGK4 314 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 IGSF8Q969P0 613 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 MLPHQ9BV36 600 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 TRABDQ9H4I3 376 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 TLR8Q9NR97 1041 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 ANKRD65E5RJM6 399 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 SCAMP3O14828 347 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 TLR5O60602 858 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 GJB5O95377 273 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 SERPINB6P35237 376 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 FDFT1P37268 417 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 MLLT6P55198 1093 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 PARP6Q2NL67 630 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 FBXO46Q6PJ61 603 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 CTAGE3PQ8IX95 158 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms