RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 HINFPQ9BQA5 517 aa19.89■□□□□ 0.77
PTCH1-227ENST00000553256 PRSS16Q9NQE7 514 aa19.89■□□□□ 0.77
PTCH1-227ENST00000553256 ITM2CQ9NQX7 267 aa19.89■□□□□ 0.77
PTCH1-227ENST00000553256 KIAA1522Q9P206 1035 aaPredicted RBP19.89■□□□□ 0.77
PTCH1-227ENST00000553256 BCCIPQ9P287 314 aaKnown RBP eCLIP19.89■□□□□ 0.77
PTCH1-227ENST00000553256 VANGL2Q9ULK5 521 aa19.89■□□□□ 0.77
PTCH1-227ENST00000553256 NEU3Q9UQ49 428 aa19.89■□□□□ 0.77
PTCH1-227ENST00000553256 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.89■□□□□ 0.77
PTCH1-227ENST00000553256 SIGLEC16A6NMB1 481 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 C10orf142B7Z368 130 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 ASLP04424 464 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 POLR2EP19388 210 aaKnown RBP19.88■□□□□ 0.77
PTCH1-227ENST00000553256 RDXP35241 583 aaKnown RBP19.88■□□□□ 0.77
PTCH1-227ENST00000553256 PTGER3P43115 390 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 VASPP50552 380 aaPredicted RBP19.88■□□□□ 0.77
PTCH1-227ENST00000553256 HDAC4P56524 1084 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 CDH18Q13634 790 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 C15orf59Q2T9L4 293 aaPredicted RBP19.88■□□□□ 0.77
PTCH1-227ENST00000553256 MANEALQ5VSG8 457 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 ACAD10Q6JQN1 1059 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 WDR59Q6PJI9 974 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 PRR23CQ6ZRP0 262 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 TMPRSS6Q8IU80 811 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 MCOLN2Q8IZK6 566 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 ZNF366Q8N895 744 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 HAPLN3Q96S86 360 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 MTG2Q9H4K7 406 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 HAUS4Q9H6D7 363 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 RXFP3Q9NSD7 469 aa19.88■□□□□ 0.77
PTCH1-227ENST00000553256 GON4LQ3T8J9 2241 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 A0A1W2PQJ5 194 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 TYW5A2RUC4 315 aaKnown RBP19.87■□□□□ 0.77
PTCH1-227ENST00000553256 DDX3XO00571 662 aaKnown RBP eCLIP19.87■□□□□ 0.77
PTCH1-227ENST00000553256 ZNF217O75362 1048 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 SERPINC1P01008 464 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 CALB1P05937 261 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 ATP5BP06576 529 aaKnown RBP19.87■□□□□ 0.77
PTCH1-227ENST00000553256 EPHX1P07099 455 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 MPLP40238 635 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 NRG1Q02297 640 aaPredicted RBP19.87■□□□□ 0.77
PTCH1-227ENST00000553256 SLC12A1Q13621 1099 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 STARD3Q14849 445 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 ELF2Q15723 593 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 RABGAP1LQ5R372 815 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 STRADAQ7RTN6 431 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 FAM131BQ86XD5 332 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 OR2T3Q8NH03 318 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 RNF34Q969K3 372 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 RPRD1AQ96P16 312 aaPredicted RBP19.87■□□□□ 0.77
PTCH1-227ENST00000553256 SMOC1Q9H4F8 434 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 PRDM16Q9HAZ2 1276 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 SLCO3A1Q9UIG8 710 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 PLA2G4CQ9UP65 541 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 ERVW-1Q9UQF0 538 aa19.87■□□□□ 0.77
PTCH1-227ENST00000553256 H0Y626 953 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 CLDN11O75508 207 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 SRPRAP08240 638 aaKnown RBP19.86■□□□□ 0.77
PTCH1-227ENST00000553256 CCDC172P0C7W6 258 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 KRT3P12035 628 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 PDGFRAP16234 1089 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 RRM1P23921 792 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 CDH4P55283 916 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 BYSLQ13895 437 aaKnown RBP19.86■□□□□ 0.77
PTCH1-227ENST00000553256 CCDC6Q16204 474 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 HNRNPA1L2Q32P51 320 aaKnown RBP19.86■□□□□ 0.77
PTCH1-227ENST00000553256 C9orf64Q5T6V5 341 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 ACBD5Q5T8D3 534 aaPredicted RBP19.86■□□□□ 0.77
PTCH1-227ENST00000553256 SLC41A1Q8IVJ1 513 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 PGBD3Q8N328 593 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 ZNF419Q96HQ0 510 aaPredicted RBP19.86■□□□□ 0.77
PTCH1-227ENST00000553256 VCPIP1Q96JH7 1222 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 SPACA7Q96KW9 195 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 PSMB7Q99436 277 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 FEM1AQ9BSK4 669 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 MAGEB5Q9BZ81 275 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 SIK2Q9H0K1 926 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 TMEM74BQ9NUR3 256 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 WSB2Q9NYS7 404 aaPredicted RBP19.86■□□□□ 0.77
PTCH1-227ENST00000553256 THADAQ6YHU6 1953 aa19.86■□□□□ 0.77
PTCH1-227ENST00000553256 NUP205Q92621 2012 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 GDF9O60383 454 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 GZMAP12544 262 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 ADRA1BP35368 520 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 TPMTP51580 245 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 UBASH3AP57075 661 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 RPL7AP62424 266 aaKnown RBP19.85■□□□□ 0.77
PTCH1-227ENST00000553256 ATP11AP98196 1134 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 OGDHQ02218 1023 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 LMNB2Q03252 620 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 SF3A2Q15428 464 aaKnown RBP19.85■□□□□ 0.77
PTCH1-227ENST00000553256 FNDC3BQ53EP0 1204 aaKnown RBP19.85■□□□□ 0.77
PTCH1-227ENST00000553256 PLEKHA7Q6IQ23 1121 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 DNAAF5Q86Y56 855 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 TMEFF1Q8IYR6 380 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 FRS2Q8WU20 508 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 SYN2Q92777 582 aaPredicted RBP19.85■□□□□ 0.77
PTCH1-227ENST00000553256 RSPH9Q9H1X1 276 aaPredicted RBP19.85■□□□□ 0.77
PTCH1-227ENST00000553256 VPS45Q9NRW7 570 aa19.85■□□□□ 0.77
PTCH1-227ENST00000553256 CYP8B1Q9UNU6 501 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms