RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 C7orf25Q9BPX7 421 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 SATB2Q9UPW6 733 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 HBS1LQ9Y450 684 aaKnown RBP13.41□□□□□ -0.26
VPS29-211ENST00000553128 U3KQA8 63 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TEX15Q9BXT5 2789 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 YJEFN3A6XGL0 299 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 E7ENQ6 273 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 CKMT1AP12532 417 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 VAV1P15498 845 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 ARID5BQ14865 1188 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 NADSYN1Q6IA69 706 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 PRR11Q96HE9 360 aaPredicted RBP13.4□□□□□ -0.26
VPS29-211ENST00000553128 BACH2Q9BYV9 841 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 LRRC27Q9C0I9 530 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 CYP3A43Q9HB55 503 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 THSD1Q9NS62 852 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 CGNQ9P2M7 1197 aaKnown RBP13.4□□□□□ -0.26
VPS29-211ENST00000553128 CYTH4Q9UIA0 394 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 ERVW-1Q9UQF0 538 aa13.4□□□□□ -0.26
VPS29-211ENST00000553128 COL27A1Q8IZC6 1860 aaPredicted RBP13.4□□□□□ -0.26
VPS29-211ENST00000553128 CASC3O15234 703 aaKnown RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 EFSO43281 561 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 IL1BP01584 269 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 SLFN14P0C7P3 912 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 TRIM21P19474 475 aaKnown RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 MZF1P28698 734 aaPredicted RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 STK19P49842 368 aaPredicted RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 ZNF445P59923 1031 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 RPS24P62847 133 aaKnown RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 SFSWAPQ12872 951 aaKnown RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 LINC00303Q3SY05 128 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 PITRM1Q5JRX3 1037 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 C6orf132Q5T0Z8 1188 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 BSPRYQ5W0U4 402 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 IQCHQ86VS3 1027 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 SLC4A11Q8NBS3 891 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 FIBINQ8TAL6 211 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 PTPRN2Q92932 1015 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 RPL10LQ96L21 214 aaKnown RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 APOLD1Q96LR9 279 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 SLC46A1Q96NT5 459 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 MYOCQ99972 504 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 UBXN6Q9BZV1 441 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 FAM117AQ9C073 453 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 NIF3L1Q9GZT8 377 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 OLA1Q9NTK5 396 aaKnown RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 HEMK1Q9Y5R4 338 aaPredicted RBP13.39□□□□□ -0.27
VPS29-211ENST00000553128 DOCK9Q9BZ29 2069 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 ITIH6Q6UXX5 1313 aa13.39□□□□□ -0.27
VPS29-211ENST00000553128 FLNCQ14315 2725 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 EDDM13A0A1B0GTR0 161 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 TARSL2A2RTX5 802 aaKnown RBP13.38□□□□□ -0.27
VPS29-211ENST00000553128 LATS1O95835 1130 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 ADH1BP00325 375 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 ASLP04424 464 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 CENPBP07199 599 aaPredicted RBP13.38□□□□□ -0.27
VPS29-211ENST00000553128 TRIM49P0CI25 452 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 TRIM49CP0CI26 452 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 C5AR1P21730 350 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 TGM2P21980 687 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 GCLMP48507 274 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 RAD23BP54727 409 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 PPP3CAQ08209 521 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 CLN3Q13286 438 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 CUL4BQ13620 913 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 STAT4Q14765 748 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 ISXQ2M1V0 245 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 MPP7Q5T2T1 576 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 CCDC81Q6ZN84 652 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 PRPF39Q86UA1 669 aaKnown RBP13.38□□□□□ -0.27
VPS29-211ENST00000553128 CARNMT1Q8N4J0 409 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 TMC2Q8TDI7 906 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 RNF139Q8WU17 664 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 TATDN2Q93075 761 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 FAM131CQ96AQ9 280 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 ATXN7L3BQ96GX2 97 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 SARDHQ9UL12 918 aa13.38□□□□□ -0.27
VPS29-211ENST00000553128 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.38□□□□□ -0.27
VPS29-211ENST00000553128 MORC2Q9Y6X9 1032 aaPredicted RBP13.38□□□□□ -0.27
VPS29-211ENST00000553128 IKBKBO14920 756 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 PLRG1O43660 514 aaKnown RBP13.37□□□□□ -0.27
VPS29-211ENST00000553128 ACSL4O60488 711 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 NEBLO76041 1014 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 IGLV3-27P01718 113 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 AMPD3Q01432 767 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 ADIGQ0VDE8 80 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 KCNMA1Q12791 1236 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 STK4Q13043 487 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 ZSCAN23Q3MJ62 389 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 ARL13BQ3SXY8 428 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 IGF2-ASQ6U949 168 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 SLC9A9Q8IVB4 645 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 GRAMD1CQ8IYS0 662 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 APCDD1Q8J025 514 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 CFAP52Q8N1V2 620 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 ANKRD52Q8NB46 1076 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 KDM1BQ8NB78 822 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 KIAA0895Q8NCT3 520 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 KLK6Q92876 244 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 KLHDC7BQ96G42 594 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms