RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 ANKRD62A6NC57 917 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TMEM110-MUSTN1A8MSY1 372 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SUPT3HO75486 399 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ABLIM3O94929 683 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SEC24AO95486 1093 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ZFXP17010 805 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SOX5P35711 763 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 PGM1P36871 562 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 MARCKSL1P49006 195 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 AP2B1P63010 937 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 CAV1Q03135 178 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 CDC16Q13042 620 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 CYLC2Q14093 348 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 DRAP1Q14919 205 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ARHGAP44Q17R89 818 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 C6orf163Q5TEZ5 329 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TDRD10Q5VZ19 366 aaKnown RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 OVOS1Q6IE37 1185 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 CES5AQ6NT32 575 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 B3GNT6Q6ZMB0 384 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 RINLQ6ZS11 566 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 GPR149Q86SP6 731 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SATL1Q86VE3 508 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SLC13A5Q86YT5 568 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 WDR49Q8IV35 697 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ARHGEF19Q8IW93 802 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 C12orf50Q8NA57 414 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SMYD1Q8NB12 490 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF461Q8TAF7 563 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 DGCR14Q96DF8 476 aaKnown RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ANKRD36BP1Q96IX9 119 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 RTP3Q9BQQ7 232 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 PI4K2AQ9BTU6 479 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 CRISPLD1Q9H336 500 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SFXN1Q9H9B4 322 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 DZANK1Q9NVP4 752 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 CLIC5Q9NZA1 410 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 APEX2Q9UBZ4 518 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 FBXW11Q9UKB1 542 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ITGA11Q9UKX5 1188 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 COQ4Q9Y3A0 265 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TCRBV7S2A1N4TA0A589 114 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 FOXN3O00409 490 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TP73O15350 636 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 HCRTO43612 131 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 E2F6O75461 281 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 VNN2O95498 520 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 GAS8O95995 478 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 C8AP07357 584 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ESRRAP11474 423 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 AMPD1P23109 780 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 RAP1GDS1P52306 607 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ITGA8P53708 1063 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 HADHBP55084 474 aaKnown RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 PHEXP78562 749 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 RBP5P82980 135 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 CREMQ03060 361 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 MED21Q13503 144 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SURF1Q15526 300 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ZACNQ401N2 412 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF280DQ6N043 979 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 RNF19BQ6ZMZ0 732 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 C15orf39Q6ZRI6 1047 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TRABD2AQ86V40 505 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 ADHFE1Q8IWW8 467 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 GJD3Q8N144 294 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 PPM1KQ8N3J5 372 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 OR10T2Q8NGX3 314 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 OLIG1Q8TAK6 271 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SLC7A14Q8TBB6 771 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 MAML1Q92585 1016 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SLCO2A1Q92959 643 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SLC35B4Q969S0 331 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TTC25Q96NG3 672 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 PGLYRP2Q96PD5 576 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 CGRRF1Q99675 332 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 PHF7Q9BWX1 381 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TRABDQ9H4I3 376 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 EBF3Q9H4W6 596 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 LRRC19Q9H756 370 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TIMMDC1Q9NPL8 285 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SEPT11Q9NVA2 429 aaKnown RBP7.88□□□□□ -1.15
LIMA1-216ENST00000552909 EURLQ9NYK6 297 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TAS2R1Q9NYW7 299 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 SNX9Q9Y5X1 595 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 NUMBLQ9Y6R0 609 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 DMDP11532 3685 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 NOTCH4Q99466 2003 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 TSC2P49815 1807 aa7.88□□□□□ -1.15
LIMA1-216ENST00000552909 DOCK8Q8NF50 2099 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 H7C4K7 107 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CCL16O15467 120 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CIB2O75838 187 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 VNN1O95497 513 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 BAG2O95816 211 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 HLA-DRAP01903 254 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 TNNC2P02585 160 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CYP11A1P05108 521 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 PYGMP11217 842 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms