RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SARNPP82979 210 aaKnown RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CCNIQ14094 377 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 HIC1Q14526 733 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 SLC9B1Q4ZJI4 515 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 FBXO47Q5MNV8 452 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 PDPK2PQ6A1A2 396 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 C4orf22Q6V702 233 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CHRDL2Q6WN34 429 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 FRMD7Q6ZUT3 714 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CATSPER4Q7RTX7 472 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 PID1Q7Z2X4 250 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 OSTM1Q86WC4 334 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ERO1BQ86YB8 467 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 HPS6Q86YV9 775 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ZDHHC17Q8IUH5 632 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 TTC39CQ8N584 583 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 SLC26A7Q8TE54 656 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CDKL2Q92772 493 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 APBB2Q92870 758 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF669Q96BR6 464 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 OPTNQ96CV9 577 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 MFSD3Q96ES6 412 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CERS2Q96G23 380 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 TUBGCP5Q96RT8 1024 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 TSC22D3Q99576 134 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ECSITQ9BQ95 431 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 GCOM2Q9BZD3 368 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 C1orf21Q9H246 121 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CREBZFQ9NS37 354 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 PIGVQ9NUD9 493 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 GTF2IRD1Q9UHL9 959 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 MRPL42Q9Y6G3 142 aaKnown RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 KPNA7A9QM74 516 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF487B1APH4 448 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 E9PBE3 544 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 M0QYT0 321 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 KLHL41O60662 606 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 RNASEH1O60930 286 aaKnown RBP7.68□□□□□ -1.18
LIMA1-213ENST00000552720 SERPINE1P05121 402 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 LYNP07948 512 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 FDFT1P37268 417 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 COPAP53621 1224 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ABCE1P61221 599 aaKnown RBP7.68□□□□□ -1.18
LIMA1-213ENST00000552720 DSG1Q02413 1049 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 CDK18Q07002 472 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 SFT2D3Q587I9 215 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 EFHC1Q5JVL4 640 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 C6orf163Q5TEZ5 329 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 STRADAQ7RTN6 431 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 NT5DC4Q86YG4 428 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 VCXQ9H320 206 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 S100A14Q9HCY8 104 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 CPSF2Q9P2I0 782 aaKnown RBP7.68□□□□□ -1.18
LIMA1-213ENST00000552720 DCDC2Q9UHG0 476 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ADAMTS6Q9UKP5 1117 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 G3BP2Q9UN86 482 aaKnown RBP7.68□□□□□ -1.18
LIMA1-213ENST00000552720 SNX10Q9Y5X0 201 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 GOLGA8QA0A0J9YX86 632 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 GOLGA8OA6NCC3 632 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 MAGEA13PA6NCF6 341 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 GOLGA8NF8WBI6 632 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ATP9BO43861 1147 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 LTFP02788 710 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 POLBP06746 335 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 MLNP12872 115 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 CPA3P15088 417 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 TPH1P17752 444 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ITGAXP20702 1163 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 GJA5P36382 358 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 IREB2P48200 963 aaKnown RBP7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ASPHQ12797 758 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 IFRD2Q12894 506 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-213ENST00000552720 CUL3Q13618 768 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ITGA7Q13683 1181 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 SLC25A52Q3SY17 297 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 HSP90AA5PQ58FG0 334 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 CERCAMQ5T4B2 595 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 FSTL4Q6MZW2 842 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 SLC27A1Q6PCB7 646 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ISLR2Q6UXK2 745 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 CYS1Q717R9 158 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 STRA8Q7Z7C7 330 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 UNC93AQ86WB7 457 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 DEFB107AQ8IZN7 70 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 BEST2Q8NFU1 509 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 PPTC7Q8NI37 304 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ACMSDQ8TDX5 336 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 TMEM40Q8WWA1 233 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ATP2A3Q93084 1043 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 DCPSQ96C86 337 aaKnown RBP7.68□□□□□ -1.18
LIMA1-213ENST00000552720 OR52B2Q96RD2 323 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ADAMTS10Q9H324 1103 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 MROH8Q9H579 483 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 COG4Q9H9E3 785 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 UBP1Q9NZI7 540 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 TXNDC16Q9P2K2 825 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 CDH22Q9UJ99 828 aa7.68□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF236Q9UL36 1845 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 SMIM28A0A1B0GU29 152 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms