RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SMURF2Q9HAU4 748 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 HELLSQ9NRZ9 838 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 OLA1Q9NTK5 396 aaKnown RBP4.17□□□□□ -1.74
LIMA1-208ENST00000551691 BABAM1Q9NWV8 329 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 JKAMPQ9P055 326 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 POLG2Q9UHN1 485 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 MTO1Q9Y2Z2 717 aaKnown RBP4.17□□□□□ -1.74
LIMA1-208ENST00000551691 TCAF1Q9Y4C2 921 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 RPS6KL1Q9Y6S9 549 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 R4GN57 208 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 DSPP15924 2871 aaKnown RBP4.17□□□□□ -1.74
LIMA1-208ENST00000551691 DOCK1Q14185 1865 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 ELP1O95163 1332 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 MYH3P11055 1940 aa4.17□□□□□ -1.74
LIMA1-208ENST00000551691 COL4A4P53420 1690 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 LAMA5O15230 3695 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 LOC400499M0QZD8 3231 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 A0A0B4J269 797 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 A0A0U1RQG5 324 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 AQP7P3A6NL99 342 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 PRSS47A8MTI9 375 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 TMEM233B4DJY2 109 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 C19orf81C9J6K1 198 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 EYA2O00167 538 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 CYR61O00622 381 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 ZNF623O75123 536 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 RASAL1O95294 804 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 SNAI1O95863 264 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 ZEB1P37275 1124 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 SELENOPP49908 381 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 CPT1AP50416 773 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 AP2B1P63010 937 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 ATP2C1P98194 919 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 UBE3AQ05086 875 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 TOP3AQ13472 1001 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 ARHGEF7Q14155 803 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 MAPKAPK3Q16644 382 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 CCDC57Q2TAC2 916 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 MGAT5BQ3V5L5 792 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 CAVIN4Q5BKX8 364 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 UTP14CQ5TAP6 766 aaKnown RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 MRNIPQ6NTE8 343 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 C1orf122Q6ZSJ8 110 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 USP37Q86T82 979 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 RPAINQ86UA6 219 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 KRT73Q86Y46 540 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 REXO1L1PQ8IX06 675 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 BCL6BQ8N143 479 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 KLHL36Q8N4N3 616 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 TSPYL6Q8N831 410 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 DCBLD1Q8N8Z6 715 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 FAM46DQ8NEK8 389 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 SHCBP1Q8NEM2 672 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 OR56A3Q8NH54 315 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 Q8TCH9 128 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 ASB12Q8WXK4 309 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 C3orf49Q96BT1 292 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 MAELQ96JY0 434 aaKnown RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 RPGRIP1Q96KN7 1286 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 RPL10LQ96L21 214 aaKnown RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 COG8Q96MW5 612 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 TGS1Q96RS0 853 aaKnown RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 CDK5RAP1Q96SZ6 601 aaKnown RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 RTKNQ9BST9 563 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 KRTAP9-8Q9BYQ0 159 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 IMPG2Q9BZV3 1241 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 KIAA1683Q9H0B3 1180 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 ZCWPW1Q9H0M4 648 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 PCED1AQ9H1Q7 454 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 SLC6A15Q9H2J7 730 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 DHX36Q9H2U1 1008 aaKnown RBP4.16□□□□□ -1.74
LIMA1-208ENST00000551691 XPR1Q9UBH6 696 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 NRBP1Q9UHY1 535 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 A0A1B0GUL6 1792 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 TET1Q8NFU7 2136 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 MROH7Q68CQ1 1323 aa4.16□□□□□ -1.74
LIMA1-208ENST00000551691 ZNFX1Q9P2E3 1918 aaKnown RBP4.15□□□□□ -1.74
LIMA1-208ENST00000551691 A0A087WWL8 130 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 CDHR4A6H8M9 788 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 PATE3B3GLJ2 98 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 LOC730098B7Z3J9 87 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 NPIPB8E9PQR5 432 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 CCER2I3L3R5 266 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 K7ENM7 598 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 HOXC11O43248 304 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 FOXS1O43638 330 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 STRNO43815 780 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 ZBED4O75132 1171 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SLC43A1O75387 559 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 PIAS2O75928 621 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 DDX58O95786 925 aaKnown RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 GLP2RO95838 553 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 POMCP01189 267 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 ITGA5P08648 1049 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 SBK3P0C264 359 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 PIM1P11309 404 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-208ENST00000551691 AKR1A1P14550 325 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 NPPBP16860 134 aa4.15□□□□□ -1.75
LIMA1-208ENST00000551691 EGR1P18146 543 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms