RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 NDST4Q9H3R1 872 aa13.79□□□□□ -0.2
CPSF6-204ENST00000547486 FAM204AQ9H8W3 233 aa13.79□□□□□ -0.2
CPSF6-204ENST00000547486 ASNSD1Q9NWL6 643 aa13.79□□□□□ -0.2
CPSF6-204ENST00000547486 DDIT4Q9NX09 232 aa13.79□□□□□ -0.2
CPSF6-204ENST00000547486 KLK13Q9UKR3 277 aa13.79□□□□□ -0.2
CPSF6-204ENST00000547486 FNDC3AQ9Y2H6 1198 aaKnown RBP13.79□□□□□ -0.2
CPSF6-204ENST00000547486 PCNX2A6NKB5 2137 aa13.79□□□□□ -0.2
CPSF6-204ENST00000547486 ASPMQ8IZT6 3477 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 CACNA1BQ00975 2339 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 CACNA1EQ15878 2313 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 FAM170AA1A519 330 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 F5H5T6 163 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 KCNK3O14649 394 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 MID1O15344 667 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 HSF2BPO75031 334 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 CBFA2T3O75081 653 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 IGHV4-34P06331 123 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 SRPRAP08240 638 aaKnown RBP13.78□□□□□ -0.2
CPSF6-204ENST00000547486 CCR1P32246 355 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 KRT9P35527 623 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 STK19P49842 368 aaPredicted RBP13.78□□□□□ -0.2
CPSF6-204ENST00000547486 IRAK1P51617 712 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 SLC6A3Q01959 620 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 AUHQ13825 339 aaKnown RBP13.78□□□□□ -0.2
CPSF6-204ENST00000547486 KIF19Q2TAC6 998 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 PTPN20Q4JDL3 420 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 KCNT1Q5JUK3 1230 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 FBXL22Q6P050 247 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 LAYNQ6UX15 382 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 C14orf80Q86SX3 495 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 MMAAQ8IVH4 418 aaKnown RBP13.78□□□□□ -0.2
CPSF6-204ENST00000547486 NAXDQ8IW45 347 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 CCDC117Q8IWD4 279 aaPredicted RBP13.78□□□□□ -0.2
CPSF6-204ENST00000547486 FAM71AQ8IYT1 594 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 CCAR2Q8N163 923 aaKnown RBP13.78□□□□□ -0.2
CPSF6-204ENST00000547486 CHCHD4Q8N4Q1 142 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 OR52K2Q8NGK3 314 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 GATA6Q92908 595 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 PTPRN2Q92932 1015 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 TUBGCP2Q9BSJ2 902 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 NEUROG2Q9H2A3 272 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 SGK2Q9HBY8 427 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 TM9SF3Q9HD45 589 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 ANLNQ9NQW6 1124 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 FBXL12Q9NXK8 326 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 SNX11Q9Y5W9 270 aa13.78□□□□□ -0.2
CPSF6-204ENST00000547486 A0A1W2PP55 124 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 TARSL2A2RTX5 802 aaKnown RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 I6L893 689 aaPredicted RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 VAV1P15498 845 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 PDGFRAP16234 1089 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 TFE3P19532 575 aaPredicted RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 ABCB4P21439 1286 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 CD27P26842 260 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 ERCC5P28715 1186 aaPredicted RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 SLC8A1P32418 973 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 GGCXP38435 758 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 MATKP42679 507 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 AFF3P51826 1226 aaKnown RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 PLK1P53350 603 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 GALCP54803 685 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 CENPCQ03188 943 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 NME3Q13232 169 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 CST6Q15828 149 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 OTUD1Q5VV17 481 aaPredicted RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 CXorf57Q6NSI4 855 aaKnown RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 DBX2Q6ZNG2 339 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 CFAP47Q6ZTR5 3102 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 USP30Q70CQ3 517 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 STK40Q8N2I9 435 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 KDF1Q8NAX2 398 aaPredicted RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 GANCQ8TET4 914 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 RNF34Q969K3 372 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 ALG14Q96F25 216 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 EBF2Q9HAK2 575 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 OSGEPQ9NPF4 335 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 TM7SF3Q9NS93 570 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 SAMSN1Q9NSI8 373 aaKnown RBP13.77□□□□□ -0.21
CPSF6-204ENST00000547486 SLC12A6Q9UHW9 1150 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 PCOLCE2Q9UKZ9 415 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 NCKAP1Q9Y2A7 1128 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 HS3ST4Q9Y661 456 aa13.77□□□□□ -0.21
CPSF6-204ENST00000547486 NUMA1Q14980 2115 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 ITIH6Q6UXX5 1313 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 EDDM13A0A1B0GTR0 161 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 FAM47DPA6NHR8 397 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 C10orf142B7Z368 130 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 M0QYT0 321 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 RNASEH1O60930 286 aaKnown RBP13.76□□□□□ -0.21
CPSF6-204ENST00000547486 MOCS3O95396 460 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 ZNF883P0CG24 379 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 SLC2A3P11169 496 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 PRKCSHP14314 528 aaPredicted RBP13.76□□□□□ -0.21
CPSF6-204ENST00000547486 METAP1P53582 386 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 HNRNPDQ14103 355 aaKnown RBP13.76□□□□□ -0.21
CPSF6-204ENST00000547486 DRAP1Q14919 205 aaPredicted RBP13.76□□□□□ -0.21
CPSF6-204ENST00000547486 TTC31Q49AM3 519 aaPredicted RBP13.76□□□□□ -0.21
CPSF6-204ENST00000547486 KLHDC7AQ5VTJ3 777 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 KIAA0895LQ68EN5 471 aa13.76□□□□□ -0.21
CPSF6-204ENST00000547486 SMYD5Q6GMV2 418 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms