RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 FUBP3Q96I24 572 aaKnown RBP eCLIP4.34□□□□□ -1.71
SNHG1-220ENST00000544550 HIC2Q96JB3 615 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 COX4I2Q96KJ9 171 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 XPO6Q96QU8 1125 aaKnown RBP4.34□□□□□ -1.71
SNHG1-220ENST00000544550 SLC22A12Q96S37 553 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 MMS19Q96T76 1030 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 ACBD6Q9BR61 282 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 PYM1Q9BRP8 204 aaKnown RBP4.34□□□□□ -1.71
SNHG1-220ENST00000544550 TRIM4Q9C037 500 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 CCSER1Q9C0I3 900 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 CD248Q9HCU0 757 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 ZDHHC4Q9NPG8 344 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 ITM2CQ9NQX7 267 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 THSD1Q9NS62 852 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 ARHGAP28Q9P2N2 729 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 STOML1Q9UBI4 398 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 EIF2B4Q9UI10 523 aaKnown RBP4.34□□□□□ -1.71
SNHG1-220ENST00000544550 DERAQ9Y315 318 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 PAXBP1Q9Y5B6 917 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 SNX11Q9Y5W9 270 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 CPQQ9Y646 472 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 MUC22E2RYF6 1773 aaPredicted RBP4.34□□□□□ -1.71
SNHG1-220ENST00000544550 TNRC6BQ9UPQ9 1833 aaKnown RBP4.34□□□□□ -1.71
SNHG1-220ENST00000544550 PLXNB3Q9ULL4 1909 aa4.34□□□□□ -1.71
SNHG1-220ENST00000544550 THADAQ6YHU6 1953 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 COL5A1P20908 1838 aaPredicted RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ARID2Q68CP9 1835 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 A0A087WWV3 80 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 A0A1B0GTQ1 180 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ANKRD34BA5PLL1 514 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 LACTBL1A8MY62 500 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 PIRO00625 290 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SHOXO15266 292 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SUV39H1O43463 412 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SYNCRIPO60506 623 aaKnown RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 TULP3O75386 442 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 MED24O75448 989 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 KRT38O76015 456 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 CDKL5O76039 1030 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 OLFM2O95897 454 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 IGHDP01880 384 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ITGAVP06756 1048 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 EPHX1P07099 455 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 NAT2P11245 290 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ABCB4P21439 1286 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SCP2P22307 547 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 CYP2F1P24903 491 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ANXA13P27216 316 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 PDIA3P30101 505 aaKnown RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 PNPLA4P41247 253 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 WASP42768 502 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ARRB1P49407 418 aaPredicted RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 GPR15P49685 360 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 TPMTP51580 245 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 C21orf59P57076 290 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 EVCP57679 992 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 CCT2P78371 535 aaKnown RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ZXDBP98169 803 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 E2F1Q01094 437 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 GRIN1Q05586 938 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SPAG1Q07617 926 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 MESP2Q0VG99 397 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 AUHQ13825 339 aaKnown RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 PDIA5Q14554 519 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 TMEM132DQ14C87 1099 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SAFBQ15424 915 aaKnown RBP eCLIP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ANO4Q32M45 955 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ADCK5Q3MIX3 580 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SV2CQ496J9 727 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 LY6G5CQ5SRR4 150 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SDHAF4Q5VUM1 108 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 EGFLAMQ63HQ2 1017 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 WSCD1Q658N2 575 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 C4orf50Q6ZRC1 276 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 DENND5BQ6ZUT9 1274 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 C22orf34Q6ZV56 151 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 LRRTM3Q86VH5 581 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SPATA2LQ8IUW3 424 aaPredicted RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SHISA5Q8N114 240 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 TMEM86AQ8N2M4 240 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 DCBLD1Q8N8Z6 715 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SIPA1Q96FS4 1042 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 BICD1Q96G01 975 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SPATA17Q96L03 361 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 HEXIM2Q96MH2 286 aaKnown RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ZNF560Q96MR9 790 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 TIPINQ9BVW5 301 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 ACE2Q9BYF1 805 aaPredicted RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 AGXT2Q9BYV1 514 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 MKRN2Q9H000 416 aaKnown RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 KLHL25Q9H0H3 589 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 BHMT2Q9H2M3 363 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 TM9SF3Q9HD45 589 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SPHK2Q9NRA0 654 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 STARD5Q9NSY2 213 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 DNAJC17Q9NVM6 304 aaKnown RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 CFAP97Q9P2B7 532 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 TPX2Q9ULW0 747 aaKnown RBP4.33□□□□□ -1.72
SNHG1-220ENST00000544550 KCNJ14Q9UNX9 436 aa4.33□□□□□ -1.72
SNHG1-220ENST00000544550 SH3BP1Q9Y3L3 701 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms