RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SLC28A1O00337 649 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 XPO1O14980 1071 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 AHCYL1O43865 530 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 DNTTP04053 509 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CYP1A1P04798 512 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ANXA6P08133 673 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 IRF1P10914 325 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 FDPSP14324 419 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ITGALP20701 1170 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 FASP25445 335 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PIK3R1P27986 724 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PRDX5P30044 214 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PLOD1Q02809 727 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PPARDQ03181 441 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 DDR1Q08345 913 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 MMRN1Q13201 1228 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 SAMD4BQ5PRF9 694 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 TTC27Q6P3X3 843 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 UNC93AQ86WB7 457 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 RNF149Q8NC42 400 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF248Q8NDW4 579 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 MCOLN3Q8TDD5 553 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 KCNV2Q8TDN2 545 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PTCD2Q8WV60 388 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 TMA16Q96EY4 203 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PAFAH2Q99487 392 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PCSK1NQ9UHG2 260 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PRPF19Q9UMS4 504 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 COMMD3-BMI1R4GMX3 469 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 DDR2Q16832 855 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 FNDC3BQ53EP0 1204 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 SLC30A8Q8IWU4 369 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 TDHQ8IZJ6 230 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 FBXO36Q8NEA4 188 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 OR56A4Q8NGH8 313 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 DNAJB8Q8NHS0 232 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CPA5Q8WXQ8 436 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 OXNAD1Q96HP4 312 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 UHRF1Q96T88 793 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CDCA3Q99618 268 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CYLDQ9NQC7 956 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ADPRHL2Q9NX46 363 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 A0A087WXM4 84 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 SMIM31A0A1B0GVY4 71 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 VSTM5A8MXK1 200 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 PGK1P00558 417 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 NUDT17P0C025 328 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ITGA2P17301 1181 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 PPIBP23284 216 aaKnown RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 NOS2P35228 1153 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 STAT5AP42229 794 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 CDH17Q12864 832 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TRIP10Q15642 601 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ABRAQ8N0Z2 381 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ECSITQ9BQ95 431 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 THTPAQ9BU02 230 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 OSBPL6Q9BZF3 934 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 MUC3BQ9H195 1237 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 CYP39A1Q9NYL5 469 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 WWOXQ9NZC7 414 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 PHF11Q9UIL8 331 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 MYRFQ9Y2G1 1151 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 NALCNQ8IZF0 1738 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 GRXCR2A6NFK2 248 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 LRRC72A6NJI9 287 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 H3BRB1 525 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF185O15231 689 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 RAD51BO15315 384 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 RGS14O43566 566 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 MED24O75448 989 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 CCNDBP1O95273 360 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 THP07101 528 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 FGFR2P21802 821 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 SLC1A6P48664 564 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 GRM3Q14832 879 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TBC1D25Q3MII6 688 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 CXCL17Q6UXB2 119 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 LPCAT2Q7L5N7 544 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 LRRC6Q86X45 466 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TMEM176AQ96HP8 235 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TBL1YQ9BQ87 522 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 SLC25A23Q9BV35 468 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TUT1Q9H6E5 874 aaKnown RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 BCAS3Q9H6U6 928 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ZFP14Q9HCL3 533 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 PAPOLBQ9NRJ5 636 aaKnown RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 RPS6KB2Q9UBS0 482 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 FETUBQ9UGM5 382 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 AFDNP55196 1824 aaKnown RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 NPHP3-ACAD11A0A0J9YXS1 232 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 MSH4O15457 936 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ASGR1P07306 291 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TRIM49P0CI25 452 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TRIM49CP0CI26 452 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 KDSRQ06136 332 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 PARP6Q2NL67 630 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ATAD3BQ5T9A4 648 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 DEPDC1Q5TB30 811 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 PLEKHM3Q6ZWE6 761 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 SLC9A9Q8IVB4 645 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms