RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 GJB7Q6PEY0 223 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 C11orf57Q6ZUT1 292 aaPredicted RBP13.56□□□□□ -0.24
RTN3-213ENST00000543552 ADAT2Q7Z6V5 191 aaKnown RBP13.56□□□□□ -0.24
RTN3-213ENST00000543552 ZDHHC17Q8IUH5 632 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 KDF1Q8NAX2 398 aaPredicted RBP13.56□□□□□ -0.24
RTN3-213ENST00000543552 C1orf216Q8TAB5 229 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 SKA1Q96BD8 255 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 SLC2A13Q96QE2 648 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 CDC6Q99741 560 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 OMDQ99983 421 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 TM7SF3Q9NS93 570 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 FBXL12Q9NXK8 326 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 RRN3Q9NYV6 651 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 CHMP5Q9NZZ3 219 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 CYTH4Q9UIA0 394 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 FZD4Q9ULV1 537 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 ERVW-1Q9UQF0 538 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 MSRB2Q9Y3D2 182 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 ITIH6Q6UXX5 1313 aa13.56□□□□□ -0.24
RTN3-213ENST00000543552 CHD6Q8TD26 2715 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 A0A1B0GVT2 93 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 BECN2A8MW95 431 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 FLRT2O43155 660 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 SIN3BO75182 1162 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 ADH1BP00325 375 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 ELAVL3Q14576 367 aaKnown RBP13.55□□□□□ -0.24
RTN3-213ENST00000543552 HLA-BQ31612 363 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 FSCBQ5H9T9 825 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 DSG4Q86SJ6 1040 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 GLRX5Q86SX6 157 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 PASD1Q8IV76 773 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 DHX40Q8IX18 779 aaKnown RBP13.55□□□□□ -0.24
RTN3-213ENST00000543552 SETD7Q8WTS6 366 aaKnown RBP13.55□□□□□ -0.24
RTN3-213ENST00000543552 BIRC7Q96CA5 298 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 MYO19Q96H55 970 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 MRGPRX3Q96LB0 322 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 CPXM1Q96SM3 734 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 TM9SF3Q9HD45 589 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 ACP6Q9NPH0 428 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 INTS6Q9UL03 887 aaKnown RBP13.55□□□□□ -0.24
RTN3-213ENST00000543552 PAXBP1Q9Y5B6 917 aa13.55□□□□□ -0.24
RTN3-213ENST00000543552 ZZEF1O43149 2961 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 SYNJ2BP-COX16A0A087WUM0 186 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 DFNA5O60443 496 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 RNASEH2AO75792 299 aaKnown RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 CSNK1EP49674 416 aaKnown RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 C9orf64Q5T6V5 341 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 KIAA0895LQ68EN5 471 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 OR6B2Q6IFH4 312 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 MMS22LQ6ZRQ5 1243 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 SND1Q7KZF4 910 aaKnown RBP eCLIP13.54□□□□□ -0.24
RTN3-213ENST00000543552 SLC26A9Q7LBE3 791 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 RAB44Q7Z6P3 723 aaPredicted RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 IRF2BP1Q8IU81 584 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 DEFB106AQ8N104 65 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 CCAR2Q8N163 923 aaKnown RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 MSANTD4Q8NCY6 345 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 C1orf131Q8NDD1 294 aaKnown RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 OR2T34Q8NGX1 318 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 ZCCHC14Q8WYQ9 949 aaKnown RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 GATA6Q92908 595 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 IGSF8Q969P0 613 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 MYEOVQ96EZ4 313 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 CAMK1GQ96NX5 476 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 RPRD1AQ96P16 312 aaPredicted RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 ACE2Q9BYF1 805 aaPredicted RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 PDCL3Q9H2J4 239 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 CLSTN2Q9H4D0 955 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 COX16Q9P0S2 106 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 ADAMTS1Q9UHI8 967 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 XPO7Q9UIA9 1087 aaKnown RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 DNAJC12Q9UKB3 198 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 PCOLCE2Q9UKZ9 415 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 ANKRD6Q9Y2G4 727 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 FNDC3AQ9Y2H6 1198 aaKnown RBP13.54□□□□□ -0.24
RTN3-213ENST00000543552 AKAP13Q12802 2813 aa13.54□□□□□ -0.24
RTN3-213ENST00000543552 FAM47DPA6NHR8 397 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 TTC34A8MYJ7 566 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 PES1O00541 588 aaKnown RBP13.53□□□□□ -0.24
RTN3-213ENST00000543552 MID1O15344 667 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 DAB1O75553 588 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 TOP3BO95985 862 aaKnown RBP13.53□□□□□ -0.24
RTN3-213ENST00000543552 FTH1P19P0C7X4 201 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 PDGFRAP16234 1089 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 C5AR1P21730 350 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 ERCC5P28715 1186 aaPredicted RBP13.53□□□□□ -0.24
RTN3-213ENST00000543552 SLC8A1P32418 973 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 NOS2P35228 1153 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 GRK6P43250 576 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 PSMD8P48556 350 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 CCT8P50990 548 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 C21orf59P57076 290 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 RACK1P63244 317 aaKnown RBP13.53□□□□□ -0.24
RTN3-213ENST00000543552 FAM193AP78312 1265 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 NME3Q13232 169 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 EIF4EBP2Q13542 120 aaPredicted RBP13.53□□□□□ -0.24
RTN3-213ENST00000543552 TAF5Q15542 800 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 ACBD5Q5T8D3 534 aaPredicted RBP13.53□□□□□ -0.24
RTN3-213ENST00000543552 OLFML1Q6UWY5 402 aa13.53□□□□□ -0.24
RTN3-213ENST00000543552 FAM183BPQ6ZVS7 135 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms