RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	RCOR3	Q9P2K3	495 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	CLEC4E	Q9ULY5	219 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	JRKL	Q9Y4A0	524 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	EYS	Q5T1H1	3165 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	MAN2B1	O00754	1011 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	APOL1	O14791	398 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	DDX3Y	O15523	660 aa	Known RBP	10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	CACNG3	O60359	315 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	TULP3	O75386	442 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	PYGM	P11217	842 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	KRT10	P13645	584 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	GLUL	P15104	373 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	CTH	P32929	405 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	MAPKAPK2	P49137	400 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	NUMB	P49757	651 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	PEX5	P50542	639 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	GALK1	P51570	392 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	OXCT1	P55809	520 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	DYNLT1	P63172	113 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	GRSF1	Q12849	480 aa	Known RBP eCLIP	10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	SEL1L2	Q5TEA6	688 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	RNF219	Q5W0B1	726 aa	Predicted RBP	10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	TMCO3	Q6UWJ1	677 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	TPRG1	Q6ZUI0	275 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	ZSCAN30	Q86W11	494 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	C12orf40	Q86WS4	652 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	RTL3	Q8N8U3	475 aa	Known RBP	10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	PCDH19	Q8TAB3	1148 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	FIBIN	Q8TAL6	211 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	FAM3C	Q92520	227 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	ALG3	Q92685	438 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	CHFR	Q96EP1	664 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	P2RY11	Q96G91	374 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	SHD	Q96IW2	340 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	RNF157	Q96PX1	679 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	PNKP	Q96T60	521 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	TLR10	Q9BXR5	811 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	SLC2A11	Q9BYW1	496 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	RETREG1	Q9H6L5	497 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	ARHGEF4	Q9NR80	690 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	ARHGEF3	Q9NR81	526 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	ABCB8	Q9NUT2	735 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	TMEM248	Q9NWD8	314 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	WNT16	Q9UBV4	365 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	ZNF638	Q14966	1978 aa	Known RBP	10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	XIRP2	A4UGR9	3374 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	MYO16	Q9Y6X6	1858 aa		10.44	□□□□□ -0.74
CPSF7-221	ENST00000543545	CTAGE9	A4FU28	777 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	TRIM24	O15164	1050 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	DCX	O43602	365 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	RAMP2	O60895	175 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	ATP1A1	P05023	1023 aa	Known RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	APOD	P05090	189 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	PABPC1	P11940	636 aa	Known RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	ZFX	P17010	805 aa	Predicted RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	CD72	P21854	359 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	IL4R	P24394	825 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	HOXC13	P31276	330 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	CASQ1	P31415	396 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	CD70	P32970	193 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	OPRD1	P41143	372 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	CSK	P41240	450 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	GRIA2	P42262	883 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	CDKN2B	P42772	138 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	COPS2	P61201	443 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	ZXDA	P98168	799 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	PRKCQ	Q04759	706 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	LMAN2	Q12907	356 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	DPYS	Q14117	519 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	TFDP2	Q14188	446 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	POLD3	Q15054	466 aa	Predicted RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	PON2	Q15165	354 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	GAB4	Q2WGN9	574 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	TFDP3	Q5H9I0	405 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	FSCB	Q5H9T9	825 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	IER5L	Q5T953	404 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	NAIF1	Q69YI7	327 aa	Predicted RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	IL31	Q6EBC2	164 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	AADACL2	Q6P093	401 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	C1orf228	Q6PIY5	440 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	TXNDC11	Q6PKC3	985 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	ZNF852	Q6ZMS4	543 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	SETD3	Q86TU7	594 aa	Predicted RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	NLRP14	Q86W24	1093 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	ETFBKMT	Q8IXQ9	262 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	SIX5	Q8N196	739 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	FAM71B	Q8TC56	605 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	WFDC5	Q8TCV5	224 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	TSC1	Q92574	1164 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	MSANTD3	Q96H12	275 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	CELF6	Q96J87	481 aa	Known RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	C16orf45	Q96MC5	204 aa	Predicted RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	WDR24	Q96S15	920 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	NAPG	Q99747	312 aa	Predicted RBP	10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	OSBPL8	Q9BZF1	889 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	CIPC	Q9C0C6	399 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	GGA2	Q9UJY4	613 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	VPS28	Q9UK41	221 aa		10.43	□□□□□ -0.74
CPSF7-221	ENST00000543545	NDRG2	Q9UN36	371 aa	Known RBP	10.43	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms