RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CD19P15391 556 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 SLC8A1P32418 973 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 SLC11A2P49281 568 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 NXPH1P58417 271 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 LRRC69Q6ZNQ3 347 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 ZNF557Q8N988 423 aaPredicted RBP18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 KDM1BQ8NB78 822 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 CLEC4CQ8WTT0 213 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 OMDQ99983 421 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 COL27A1Q8IZC6 1860 aaPredicted RBP18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 TLR4O00206 839 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 VDRP11473 427 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 RGS7P49802 495 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 ADPRHP54922 357 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 TBX4P57082 545 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 PPP2CBP62714 309 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 PPP2CAP67775 309 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 SFSWAPQ12872 951 aaKnown RBP18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 EDRF1Q3B7T1 1238 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 PITRM1Q5JRX3 1037 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 PMF1Q6P1K2 205 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 SND1Q7KZF4 910 aaKnown RBP eCLIP18.46■□□□□ 0.554e-10■■□□□ 11.6
CLSTN3-214ENST00000542663 SPATS2Q86XZ4 545 aaKnown RBP18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 CARNMT1Q8N4J0 409 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 SLC35F5Q8WV83 523 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 TFAP2BQ92481 460 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 SERAC1Q96JX3 654 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 FCRL2Q96LA5 508 aaPredicted RBP18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 NUCKS1Q9H1E3 243 aaKnown RBP18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 SLCO3A1Q9UIG8 710 aa18.46■□□□□ 0.55
CLSTN3-214ENST00000542663 EDDM13A0A1B0GTR0 161 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 TARSL2A2RTX5 802 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 RRP8O43159 456 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 LATO43561 262 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 STX10O60499 249 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 LTFP02788 710 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 FYNP06241 537 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 SRPRAP08240 638 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 PLA2G2AP14555 144 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 GOT1P17174 413 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 RXRGP48443 463 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 PSMD8P48556 350 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 ARRB1P49407 418 aaPredicted RBP18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 PCSK4Q6UW60 755 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 LCLAT1Q6UWP7 414 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 CFAP52Q8N1V2 620 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 STK40Q8N2I9 435 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 ZNF843Q8N446 348 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 LSM14AQ8ND56 463 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 IRGQQ8WZA9 623 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 PTPRN2Q92932 1015 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 CCDC47Q96A33 483 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 ZSWIM1Q9BR11 485 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 ERVMER34-1Q9H9K5 563 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 ARHGAP20Q9P2F6 1191 aa18.45■□□□□ 0.54
CLSTN3-214ENST00000542663 FAM237AA0A1B0GTK4 181 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 BRINP1O60477 761 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 DRD3P35462 400 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 SYKP43405 635 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 NDUFA8P51970 172 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 METAP1P53582 386 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 CDH18Q13634 790 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 MS4A13Q5J8X5 152 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 SMYD4Q8IYR2 804 aaPredicted RBP18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 APCDD1Q8J025 514 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 OR14C36Q8NHC7 312 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 RFFLQ8WZ73 363 aa18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 RPL10LQ96L21 214 aaKnown RBP18.44■□□□□ 0.54
CLSTN3-214ENST00000542663 ZNF462Q96JM2 2506 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 LUC7L3O95232 432 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 ADH1BP00325 375 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 EPB41P11171 864 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 CKMT2P17540 419 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 C5AR1P21730 350 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 STK19P49842 368 aaPredicted RBP18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 ECT2LQ008S8 904 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 INSM1Q01101 510 aaPredicted RBP18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 ILKQ13418 452 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 DCAF6Q58WW2 860 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 TCERG1LQ5VWI1 586 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 NAPEPLDQ6IQ20 393 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 ERICH1Q86X53 443 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 CACTIN-AS1Q8N1I8 211 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 BAP1Q92560 729 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 FGF11Q92914 225 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 FAM131CQ96AQ9 280 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 SLC39A13Q96H72 371 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 XPO7Q9UIA9 1087 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 KIAA1257Q9ULG3 409 aa18.43■□□□□ 0.54
CLSTN3-214ENST00000542663 TYW5A2RUC4 315 aaKnown RBP18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 VAV1P15498 845 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 ACP1P24666 158 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 MZF1P28698 734 aaPredicted RBP18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 YWHAEP62258 255 aaKnown RBP18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 TLE3Q04726 772 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 PROX2Q3B8N5 592 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 SLC45A4Q5BKX6 768 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 DCAF17Q5H9S7 520 aaPredicted RBP18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 KRBA2Q6ZNG9 492 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 GPR155Q7Z3F1 870 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms