RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PLK1P53350 603 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 FMO1Q01740 532 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 AUHQ13825 339 aaKnown RBP11.93□□□□□ -0.5
RTN3-209ENST00000538995 DUOXA1Q1HG43 343 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 C5orf22Q49AR2 442 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 ANO6Q4KMQ2 910 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 FSCBQ5H9T9 825 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 WDR45BQ5MNZ6 344 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 DAB2IPQ5VWQ8 1189 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 ZNF776Q68DI1 518 aaPredicted RBP11.93□□□□□ -0.5
RTN3-209ENST00000538995 BNIPLQ7Z465 357 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 SLC41A1Q8IVJ1 513 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 CCAR2Q8N163 923 aaKnown RBP11.93□□□□□ -0.5
RTN3-209ENST00000538995 SLC20A1Q8WUM9 679 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 TOE1Q96GM8 510 aaKnown RBP11.93□□□□□ -0.5
RTN3-209ENST00000538995 MYO19Q96H55 970 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 MRGPRX3Q96LB0 322 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 PCMTD1Q96MG8 357 aaPredicted RBP11.93□□□□□ -0.5
RTN3-209ENST00000538995 RPRD1AQ96P16 312 aaPredicted RBP11.93□□□□□ -0.5
RTN3-209ENST00000538995 NUP58Q9BVL2 599 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 WDCPQ9H6R7 721 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 NLRC4Q9NPP4 1024 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 CD93Q9NPY3 652 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 TMEM9BQ9NQ34 198 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 PRSS16Q9NQE7 514 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 PIGVQ9NUD9 493 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 TMEM74BQ9NUR3 256 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 COX16Q9P0S2 106 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 TMEM59LQ9UK28 342 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 SCML1Q9UN30 329 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 HS3ST4Q9Y661 456 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 THADAQ6YHU6 1953 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 CNOT1A5YKK6 2376 aaKnown RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 ATXN2Q99700 1313 aaKnown RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 MED19A0JLT2 244 aaPredicted RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 TARSL2A2RTX5 802 aaKnown RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 SMTNL1A8MU46 457 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 PATE3B3GLJ2 98 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 PAGE1O75459 146 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 SERPINF2P08697 491 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 CHRNB2P17787 502 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 RDXP35241 583 aaKnown RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 FLT3P36888 993 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 GSCP56915 257 aaPredicted RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 RNASE9P60153 205 aaKnown RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 IRX4P78413 519 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 ECT2LQ008S8 904 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 CENPCQ03188 943 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 DEUP1Q05D60 604 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 SFSWAPQ12872 951 aaKnown RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 TTC31Q49AM3 519 aaPredicted RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 RNF219Q5W0B1 726 aaPredicted RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 CXorf57Q6NSI4 855 aaKnown RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 CAVIN1Q6NZI2 390 aaKnown RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 MMS22LQ6ZRQ5 1243 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 CPA5Q8WXQ8 436 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 DNASE2BQ8WZ79 361 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 TBCBQ99426 244 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 ADAM33Q9BZ11 813 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 TKTL2Q9H0I9 626 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 RSPH9Q9H1X1 276 aaPredicted RBP11.92□□□□□ -0.5
RTN3-209ENST00000538995 CAPN10Q9HC96 672 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 MYO6Q9UM54 1294 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 SLC6A14Q9UN76 642 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 ERVW-1Q9UQF0 538 aa11.92□□□□□ -0.5
RTN3-209ENST00000538995 NUP205Q92621 2012 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 TNRC6BQ9UPQ9 1833 aaKnown RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 EDDM13A0A1B0GTR0 161 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 MEI4A8MW99 385 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 GOLGA8SH3BPF8 625 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 RNASEH1O60930 286 aaKnown RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 ADCY5O95622 1261 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 DNTTP04053 509 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 CFIP05156 583 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 CCDC172P0C7W6 258 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 UNGP13051 313 aaPredicted RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 ATP1A3P13637 1013 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 GNSP15586 552 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 PDGFRAP16234 1089 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 TFE3P19532 575 aaPredicted RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 NNMTP40261 264 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 NSFP46459 744 aaKnown RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 CDH4P55283 916 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 RPS14P62263 151 aaKnown RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 GFPT1Q06210 699 aaPredicted RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 ZNF177Q13360 481 aaPredicted RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 PPM1JQ5JR12 505 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 USP30Q70CQ3 517 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 CIR1Q86X95 450 aaPredicted RBP11.91□□□□□ -0.5
RTN3-209ENST00000538995 ZNF366Q8N895 744 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 IGSF8Q969P0 613 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 C1orf74Q96LT6 269 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 GPR174Q9BXC1 333 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 VANGL2Q9ULK5 521 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 TBC1D30Q9Y2I9 924 aa11.91□□□□□ -0.5
RTN3-209ENST00000538995 IGLV3-10A0A075B6K4 115 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 C4orf47A7E2U8 309 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 METTL12A8MUP2 240 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 CDX4O14627 284 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms